G487280


Basic Information

Item Value
gene id G487280
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4427574 ~ 4429926 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU559105
ATGGGCTCCTTTTTACGGTATTTGTTAAATTATTTTTGGAGCTTCACACTTCACAGCTCCAATTTTCATAATGAAAAAGCACTTCTTTTCATGGATTCCATAAAAGAAACGTCATATGGGTTTGTATCAAGTTTAGGGTGAATAAATGGCAACATTTTTGTGTCAAAAGTGGCTTGCTACATGTCAACATTCTGCCACACAGCTTGGAATTAAGACTGTCGAATGATCAAACAGGCTCTGAGCACACAGTGTTTCCCATGTGTAGCTTTATTAACTCTTGTTGGATGACTGCCCATATACAAGAGGCTTAATAAAGAAGCAAGGCTTATCAATAAAACATGAATACCAGCTGGAACCCAGCACCTGGCCGAGAGGTGTGCTATATTAAGAACCCCCATGCCTTTGTGCTCTGTTTTGCTCGACTGTAACTCCACCGTTACATTTATCTCTCCCTGCGTTCTGGATGGCTGGCTGGATGTGATATCTCCGCCCTGACTACTCAGGTGAAGTATAGTGGAGAATACAACAAGATGTATGAATTATCACTCTCCTCTGATGAAGTGAGAGAGAGCGCGATCACTATTGTATGGTTTCTGTTGTTCAACCTTTGCTCACACTTTCTGTTGAGTATTCATGGCTAATCCATCACCATGGTTACACACATACGCACAGGTTGCCATGGCAGAGGACGGGCATGTGACTGATGTTTAATTCATGAGTAAGGAATGCCAGGCGTTCCAATATACTGGACAAAGTGGATTTCAGTCACTGAGGTCTTAATAAGTCTGCTTAAAGTGTGTGTCATTTTTCGACGTTAAAATACAAAGAAAGTACAAGTGGCAGCCGATCTTTGCGACGCCCCATAAAGTCGAACAAGCCTTGTATCTTTGTGGTGCTTTAATTCAAAGCTCTGTCTGCTTGAGCATTCTGTTCAGCCCAGCAAATGCAACAACACTGACTCAACCAATGGTATGAATTATGGGGCGGGGATATGTGTTTGTTCAACTAACAGCAGACAGGGGGTGTCACCTGTTTGAATACATTCAGAAAACTGCTTAAAGTTTGAATGTGGTTTAACATTTATTGAGCATACTGAGAGAGGAATTCATAGACGTGCAGATTCAAATTTAACTTTGGGAATAAGAGCTAATGAAAACCCCAGAAAAGATAATTACTTTGTGACAGCTAAAGACCAATCTGAGTGCCAATTAATTTCAGGAACAAAGCAGAACAAGAAAAGGCCCGGTAGGTGGTCCTGAGTTGTAGATCTGAGTAAGACTGATTGACAAGACACAAAAAAGGTTTTGAAAGCTCATTGACAGAGTTACATGTATCTGTGTGTGAATAATTTAGCGTGTAAGTTCTTCATGTGACACATTCTGGATGGGATGCCTGTGCTTTGTCAGTAGGCCTGCCGTACTATACAGCGGAGTCATTGTGCCCAGTTTCCAAGATGAATTATTGAGAGAGAACAGAGTGACAGTCTGAGAGACTCCGTCTGAAACTCCGACTCACTCTGACTGCAGATAACAACACGCTCGGTGAGTCAGATAAGACTCATCTACATCATATCTCATCTGAATGACCTCTGTCAGACGGACTTTAGATGACTTCACCGACAAGAAAAGTTTTTAAAAGTCAATGCTTCAGTTTGGAGAGATAATCTTTGTGGAATCTTCTTTAACCACGTAAAATGTACCATATACACTACCGTTCAAAAGTTTGGGGTTGGTATCAATTTTTAAATGTTATTTAAAAGAAGTCTCTTATGCTCACCAAGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU559105 True 1781 lncRNA 0.41 2 4427574 4429926

Neighbor

gene id symbol gene type direction distance location
CI01000340_04399692_04401164 NA coding upstream 26114 4399419 ~ 4401496 (+)
CI01000340_04387653_04393950 NA coding upstream 33455 4387653 ~ 4394119 (+)
CI01000340_04374493_04379773 TTC22 coding upstream 47089 4374316 ~ 4380485 (+)
CI01000340_04310811_04341754 WWC3 coding upstream 85820 4310811 ~ 4341754 (+)
CI01000340_04273797_04274531 CLDN34, CLDN34A coding upstream 153041 4273597 ~ 4274533 (+)
CI01000340_04564752_04566790 NA coding downstream 134685 4564611 ~ 4567156 (+)
CI01000340_04660938_04668996 NA coding downstream 229658 4659584 ~ 4669322 (+)
CI01000340_04809014_04832590 JAK1 coding downstream 379088 4809014 ~ 4832590 (+)
CI01000340_05105114_05112407 NA coding downstream 674433 5104359 ~ 5112713 (+)
CI01000340_05165855_05175759 NA coding downstream 735320 5165246 ~ 5176372 (+)
G487260 NA non-coding upstream 30964 4356166 ~ 4396610 (+)
G487258 NA non-coding upstream 73472 4353670 ~ 4354102 (+)
G487257 NA non-coding upstream 74057 4353310 ~ 4353517 (+)
G487256 NA non-coding upstream 75022 4352317 ~ 4352552 (+)
G487255 NA non-coding upstream 76538 4350820 ~ 4351036 (+)
G487282 NA non-coding downstream 2173 4432099 ~ 4432647 (+)
G487289 NA non-coding downstream 10977 4440903 ~ 4491970 (+)
G487322 NA non-coding downstream 72620 4502546 ~ 4503214 (+)
G487323 NA non-coding downstream 74009 4503935 ~ 4504201 (+)
G487326 NA non-coding downstream 103808 4533734 ~ 4534577 (+)
G487133 NA other upstream 445029 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1495774 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 4114329 312212 ~ 313534 (+)
G485427 NA other upstream 4259940 163286 ~ 167634 (+)
G489634 NA other downstream 2264295 6694221 ~ 6700788 (+)
G490645 NA other downstream 4608886 9038812 ~ 9043101 (+)
G490826 NA other downstream 4695258 9125184 ~ 9131397 (+)
G490839 NA other downstream 4805047 9234973 ~ 9237559 (+)

Expression


Co-expression Network