G487347


Basic Information

Item Value
gene id G487347
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4547919 ~ 4627030 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU559177
GAAAAGAGCTAGTACAAGACAAGTGCCTATGGTTAAAACATATATAATTTTTTATTTTTTTTTAGAAAATGACAGATCGTTTCGCTAGATAAGAGCCTTATTCCTCGTCTGGTATCGTTAAAGCCATTTGAAGCTACACTGAAACTGTAATTTTGACCTGCAACCGTTTGGGGCCAATTGAAGTCCACTATATGGAGAAAAATCCTGGAATGTTTTCATCACAAACCTTAATTTCTTTTCGACTGAAGAAAGAAGGACATGGACATCTTGGATGACATGGGGCAGCCTGGCCATACTGACATTAACCAGAGAAGGATTTAGAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU559177 True 323 lncRNA 0.37 2 4547919 4627030

Neighbor

gene id symbol gene type direction distance location
CI01000340_04399692_04401164 NA coding upstream 146459 4399419 ~ 4401496 (+)
CI01000340_04387653_04393950 NA coding upstream 153800 4387653 ~ 4394119 (+)
CI01000340_04374493_04379773 TTC22 coding upstream 167434 4374316 ~ 4380485 (+)
CI01000340_04310811_04341754 WWC3 coding upstream 206165 4310811 ~ 4341754 (+)
CI01000340_04273797_04274531 CLDN34, CLDN34A coding upstream 273386 4273597 ~ 4274533 (+)
CI01000340_04660938_04668996 NA coding downstream 32554 4659584 ~ 4669322 (+)
CI01000340_04809014_04832590 JAK1 coding downstream 181984 4809014 ~ 4832590 (+)
CI01000340_05105114_05112407 NA coding downstream 477329 5104359 ~ 5112713 (+)
CI01000340_05165855_05175759 NA coding downstream 538216 5165246 ~ 5176372 (+)
CI01000340_05338225_05385755 DOCK7 coding downstream 711195 5338225 ~ 5385755 (+)
G487326 NA non-coding upstream 13342 4533734 ~ 4534577 (+)
G487323 NA non-coding upstream 43718 4503935 ~ 4504201 (+)
G487322 NA non-coding upstream 44705 4502546 ~ 4503214 (+)
G487289 NA non-coding upstream 55949 4440903 ~ 4491970 (+)
G487282 NA non-coding upstream 115272 4432099 ~ 4432647 (+)
G487444 NA non-coding downstream 92232 4719262 ~ 4719516 (+)
G487445 NA non-coding downstream 95437 4722467 ~ 4722672 (+)
G487446 NA non-coding downstream 100075 4727105 ~ 4727336 (+)
G487447 NA non-coding downstream 100674 4727704 ~ 4728019 (+)
G487133 NA other upstream 565374 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1616119 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 4234674 312212 ~ 313534 (+)
G485427 NA other upstream 4380285 163286 ~ 167634 (+)
G489634 NA other downstream 2067191 6694221 ~ 6700788 (+)
G490645 NA other downstream 4411782 9038812 ~ 9043101 (+)
G490826 NA other downstream 4498154 9125184 ~ 9131397 (+)
G490839 NA other downstream 4607943 9234973 ~ 9237559 (+)

Expression


Co-expression Network