G488888


Basic Information

Item Value
gene id G488888
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4688014 ~ 4693632 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU560886
TTCAACATTAATAATAATGTTTGTTGAGCACCAAATCAGCATATTAGAATGATTTCTAAAGGATCATGTGACACTGAAGACTGGAGTAATGATTGCTGATAATTCACCTGTTACAAAACCCTGGTGTATAAAGCACACGACGAGGAGATATAATCAGAATAAGTCTTTTACTAGGAAATCCAAATGGAGAGATCAGGAACATACAGGAACACACCAAAGTATACATGAACGATACCGGACCACACAAGACTGGAAACACAGGGCTTATATACATGGAATAACAAGGTGGGTGATTAGACACAGCTGGATGTGATCAGTTACCAAGGTGAATGACTAGTGGCGGGAAATAGAACAACAACAAGTCCAAAAAAAAAAAAAAAAAAAAAAAGAGGTTGTTATAGCCTACAAGTTTATGTGTAATAAATTCTATGTTGAATCAAATAAAAGATTTCTTTCTAAAGCTACTTTTTGTAATGTCTATTCGATGCTTTTCTCATTTAACACAATAATGACTTTAAAAATATCTTTTGGGGGTAATTTCTCTGACAAATGTGATGTCTGATTAATTTGCAATTAATTCGATAAATTAATCGGCACATCATGTAATTAATTACATTAAAAATTTTAAACGGTTGACAGCCCTAAAATAATCGTTAAACCAAAATGCATTAAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU560886 True 673 lncRNA 0.33 3 4688014 4693632

Neighbor

gene id symbol gene type direction distance location
CI01000340_04598932_04627160 NA coding downstream 60567 4598714 ~ 4627447 (-)
CI01000340_04586637_04588967 NA coding downstream 98651 4586379 ~ 4596261 (-)
CI01000340_04491232_04534682 PDE4B, PDE4BA coding downstream 153332 4490608 ~ 4534682 (-)
CI01000340_04403305_04410695 SGIP1A, SGIP1 coding downstream 277319 4403156 ~ 4410695 (-)
CI01000340_04384950_04386594 PARS2 coding downstream 301420 4384810 ~ 4386594 (-)
CI01000340_04748822_04770480 DNAJC6 coding upstream 54649 4748281 ~ 4770480 (-)
CI01000340_04787190_04796424 AK4 coding upstream 93306 4786938 ~ 4796424 (-)
CI01000340_04840574_04911814 RAVER2 coding upstream 145671 4839303 ~ 4914305 (-)
CI01000340_04918923_04993041 CACHD1 coding upstream 224982 4918614 ~ 4993274 (-)
CI01000340_05011408_05036816 ROR1 coding upstream 317651 5011283 ~ 5036816 (-)
G488829 NA non-coding downstream 417527 4270218 ~ 4270487 (-)
G488826 NA non-coding downstream 420142 4267656 ~ 4267872 (-)
G488573 NA non-coding downstream 529492 4125363 ~ 4158522 (-)
G488797 NA non-coding downstream 614559 4073118 ~ 4073455 (-)
G488795 NA non-coding downstream 653635 4034146 ~ 4034379 (-)
G488948 NA non-coding upstream 23948 4717580 ~ 4717841 (-)
G488950 NA non-coding upstream 28209 4721841 ~ 4722055 (-)
G488951 NA non-coding upstream 29216 4722848 ~ 4723114 (-)
G488954 NA non-coding upstream 34054 4727686 ~ 4728165 (-)
G488876 NA non-coding upstream 104691 4798323 ~ 4798590 (-)
G488862 NA other downstream 91753 4507196 ~ 4518120 (-)
G488782 NA other downstream 681566 4005805 ~ 4006448 (-)
G487884 NA other downstream 2785742 1895801 ~ 1902272 (-)
CI01000340_00787534_00791061 NA other downstream 3896605 786551 ~ 791409 (-)
CI01000340_05321995_05329778 ATG4C other upstream 627121 5320753 ~ 5330215 (-)
CI01000340_06095704_06194498 MAST2 other upstream 1489658 6095704 ~ 6194501 (-)
G489511 NA other upstream 1626825 6320457 ~ 6327372 (-)
G491712 NA other upstream 4105569 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 5328260 10025656 ~ 10029589 (-)

Expression


Co-expression Network