G487397


Basic Information

Item Value
gene id G487397
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 4796811 ~ 4798223 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU559228
ACGGTGGCGTCAGAACATAAGAGATATTAAACGCAGTTCACTTCGGGTATGCACTGTCAAAATCAGTCGACTTTTCAAACCTTCCATAGGACAACAGTCATTCTGCATTAAAAAAAGTGGTGAACTTTGAGCGTCAGGACCCGGAAGCGTGTTATTTTATTGTCACATGGCTTGAAGATTTCAATAACAACAAAAAATGGCGACAATCACGTTGTTCGCTGTAAGGCGCTTGCTGCGTCATTAAAAATATTCACGTAAACACGGGAGTTAAGCGTTGAAAATGCAAGTAAGTACTTTTGCTATCGGTAGAATAATGCATCTGTCTAACTGTGATGGTGATATTACATTAATGTTTTTACCTTAGAAGTACGTGGTGTTTGTTTTTGCTATGAGAGGGGTGTGTGCGCGCGCTGTTGGGCGTTAGCGCGCATCAATACAGTACAATTAGAAGACTCATGAGGTATAAGACTATAAAACGAGTCGACATAGCAAGTAGAACAGCTGCTTTATATGCAGAACATTTACGGTACTTTTTATGATATTATATGACATGATCATGTAATGCCTTTTCGTGTAATAACTTATGTATAATTTATTGCAGACTCTACTGACTTCATGACGTTCTAACGGGCTTCTTTCTCAAACACATTGTATTAATTTATAGTTTATAAATGATATAGCTCGGATGTTCCTCACATAAATTACTTTTATTTAAAACTGTAGTTTCATCAAACATAAACATTTTTCCATGAGAAGTCGCAACACGCTATAACAGCAAGAATATTCCCGTTTTAACCCATTGAAATGTTTTTCTTTCCTTTTTTCCCCCGAAACAGCCGCTATAGGAATGTTAGGCAGATGTTTTGTCATTATTTGGCAGGCGTTTCCACTGTCCTGAGATGGCAAACACGACGCGCTGATGGAGTTGTTTACAAGAAGAGATTCGCACGGAGGGCGGGGAAGCTGTGGGCGGAGTCTGTGGGAGGAACCACTTGCTTGCCAAATAACGAGAGCAAAGCATAGAAGGTGGAGACAGAGTTACCATAACAAGTCTGACGTCACAGGGGCGGTGTTTATGAATAATTAAAGCTCAAAACGAAGGTATTGAATCTCTTGCTGACAGATAGGGAGTTGTCATTTAATGCAGTGTATCCAATGAAAATGTGGCATGATATTCAATTTTTGCTAGCTACACAGTATAAGTTATGTTAAATAATAAAATGCTTCATCTACTTATTTCTATAATATATACAGTTGGAAATGTCAGGTTTAATTAGCCTATATTATATTTTACTTGTTATATTTTGAATAGATTAAACCTGTGGAATTCACTTTATCTCTGATATTTAAAGTCAAAGTTGTTACCCCTGAATGAACATGGAAGAGAAGATGCGTGAAGCACTACCGCCCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU559228 True 1413 lncRNA 0.38 1 4796811 4798223

Neighbor

gene id symbol gene type direction distance location
CI01000340_04660938_04668996 NA coding upstream 127489 4659584 ~ 4669322 (+)
CI01000340_04564752_04566790 NA coding upstream 229655 4564611 ~ 4567156 (+)
CI01000340_04399692_04401164 NA coding upstream 395351 4399419 ~ 4401496 (+)
CI01000340_04387653_04393950 NA coding upstream 402692 4387653 ~ 4394119 (+)
CI01000340_04374493_04379773 TTC22 coding upstream 416326 4374316 ~ 4380485 (+)
CI01000340_04809014_04832590 JAK1 coding downstream 10791 4809014 ~ 4832590 (+)
CI01000340_05105114_05112407 NA coding downstream 306136 5104359 ~ 5112713 (+)
CI01000340_05165855_05175759 NA coding downstream 367023 5165246 ~ 5176372 (+)
CI01000340_05338225_05385755 DOCK7 coding downstream 540002 5338225 ~ 5385755 (+)
CI01000340_05433329_05446428 KANK4 coding downstream 635106 5433329 ~ 5446781 (+)
G487470 NA non-coding upstream 7085 4780351 ~ 4789726 (+)
G487447 NA non-coding upstream 68792 4727704 ~ 4728019 (+)
G487446 NA non-coding upstream 69475 4727105 ~ 4727336 (+)
G487445 NA non-coding upstream 74139 4722467 ~ 4722672 (+)
G487444 NA non-coding upstream 77295 4719262 ~ 4719516 (+)
G487498 NA non-coding downstream 101664 4899887 ~ 4900735 (+)
G487505 NA non-coding downstream 111001 4909224 ~ 4909874 (+)
G487507 NA non-coding downstream 114056 4912279 ~ 4912502 (+)
G487580 NA non-coding downstream 284790 5083013 ~ 5083279 (+)
G487581 NA non-coding downstream 291246 5089469 ~ 5089673 (+)
G487133 NA other upstream 814266 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 1865011 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 4483566 312212 ~ 313534 (+)
G489634 NA other downstream 1895998 6694221 ~ 6700788 (+)
G490645 NA other downstream 4240589 9038812 ~ 9043101 (+)
G490826 NA other downstream 4326961 9125184 ~ 9131397 (+)
G490839 NA other downstream 4436750 9234973 ~ 9237559 (+)
G490896 NA other downstream 5033250 9831473 ~ 9845052 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032117 NA non-coding NC_007117.7 CM002890.2 31362348 ~ 31365216 (+)
rainbow trout (Oncorhynchus mykiss) LOC110521799 NA misc NC_050570.1 CM025857.1 38223112 ~ 38224803 (+)