G487580


Basic Information

Item Value
gene id G487580
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 5083013 ~ 5083279 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU559422
CCATCCAGGAATATGAGGTGTAGAGAGGGGGGACAAAGATGGAGAGAGAGAAAGAAAGAAAGATATTAAAAACATTTATTAACAGTGTCACATATTATGTATTCTGTAAAGCAACATCTCTAGGATAGCTTATGCTAAATGTATAGGGGTATTTTTCCACTTTGAACAACTTAACTATAAATAAAGTTAAATTTCAAGCATTTATTAACATATGTATAAAGTAGAATGTACCATGTACAATTAAATTCTTACTTGGGTACCTCCTGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU559422 True 267 lncRNA 0.32 1 5083013 5083279

Neighbor

gene id symbol gene type direction distance location
CI01000340_04809014_04832590 JAK1 coding upstream 250423 4809014 ~ 4832590 (+)
CI01000340_04660938_04668996 NA coding upstream 413691 4659584 ~ 4669322 (+)
CI01000340_04564752_04566790 NA coding upstream 515857 4564611 ~ 4567156 (+)
CI01000340_04399692_04401164 NA coding upstream 681553 4399419 ~ 4401496 (+)
CI01000340_04387653_04393950 NA coding upstream 688894 4387653 ~ 4394119 (+)
CI01000340_05105114_05112407 NA coding downstream 21080 5104359 ~ 5112713 (+)
CI01000340_05165855_05175759 NA coding downstream 81967 5165246 ~ 5176372 (+)
CI01000340_05338225_05385755 DOCK7 coding downstream 254946 5338225 ~ 5385755 (+)
CI01000340_05433329_05446428 KANK4 coding downstream 350050 5433329 ~ 5446781 (+)
CI01000340_05646434_05651598 NA coding downstream 562358 5645637 ~ 5652345 (+)
G487507 NA non-coding upstream 170511 4912279 ~ 4912502 (+)
G487505 NA non-coding upstream 173139 4909224 ~ 4909874 (+)
G487498 NA non-coding upstream 182278 4899887 ~ 4900735 (+)
G487397 NA non-coding upstream 284790 4796811 ~ 4798223 (+)
G487470 NA non-coding upstream 293287 4780351 ~ 4789726 (+)
G487581 NA non-coding downstream 6190 5089469 ~ 5089673 (+)
G487602 NA non-coding downstream 59164 5142443 ~ 5150616 (+)
G487638 NA non-coding downstream 69211 5152490 ~ 5152964 (+)
G487658 NA non-coding downstream 141047 5224326 ~ 5224700 (+)
G487709 NA non-coding downstream 460517 5543796 ~ 5573983 (+)
G487133 NA other upstream 1100468 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 2151213 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 4769768 312212 ~ 313534 (+)
G489634 NA other downstream 1610942 6694221 ~ 6700788 (+)
G490645 NA other downstream 3955533 9038812 ~ 9043101 (+)
G490826 NA other downstream 4041905 9125184 ~ 9131397 (+)
G490839 NA other downstream 4151694 9234973 ~ 9237559 (+)
G490896 NA other downstream 4748194 9831473 ~ 9845052 (+)

Expression


Co-expression Network