Gene
RNA
| Item | Value |
|---|---|
| gene id | G488853 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 5090235 ~ 5132749 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| description |
|---|
| unnamed protein product |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU560851 | True | 41909 | lncRNA | 0.36 | 3 | 5090235 | 5132749 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_05011408_05036816 | ROR1 | coding | downstream | 53419 | 5011283 ~ 5036816 (-) |
| CI01000340_04918923_04993041 | CACHD1 | coding | downstream | 96961 | 4918614 ~ 4993274 (-) |
| CI01000340_04840574_04911814 | RAVER2 | coding | downstream | 175930 | 4839303 ~ 4914305 (-) |
| CI01000340_04787190_04796424 | AK4 | coding | downstream | 293811 | 4786938 ~ 4796424 (-) |
| CI01000340_04748822_04770480 | DNAJC6 | coding | downstream | 319755 | 4748281 ~ 4770480 (-) |
| CI01000340_05142661_05150544 | PGM1, PGM2 | coding | upstream | 9709 | 5142458 ~ 5150627 (-) |
| CI01000340_05153622_05164991 | EFCAB7 | coding | upstream | 20810 | 5153559 ~ 5165049 (-) |
| CI01000340_05177681_05192437 | ALG6 | coding | upstream | 44844 | 5177593 ~ 5192437 (-) |
| CI01000340_05196551_05197666 | FOXD3 | coding | upstream | 63379 | 5196128 ~ 5198285 (-) |
| CI01000340_05321995_05329778 | ATG4C | coding | upstream | 188286 | 5320753 ~ 5330215 (-) |
| G488971 | NA | non-coding | downstream | 81242 | 5008653 ~ 5008993 (-) |
| G488965 | NA | non-coding | downstream | 86486 | 4994888 ~ 5003749 (-) |
| G488849 | NA | non-coding | downstream | 289705 | 4798797 ~ 4800530 (-) |
| G488876 | NA | non-coding | downstream | 291645 | 4798323 ~ 4798590 (-) |
| G488954 | NA | non-coding | downstream | 362070 | 4727686 ~ 4728165 (-) |
| G488878 | NA | non-coding | upstream | 18566 | 5151315 ~ 5152688 (-) |
| G489030 | NA | non-coding | upstream | 139311 | 5272060 ~ 5272285 (-) |
| G489032 | NA | non-coding | upstream | 150164 | 5282913 ~ 5283225 (-) |
| G489083 | NA | non-coding | upstream | 316128 | 5448877 ~ 5449105 (-) |
| G489108 | NA | non-coding | upstream | 385433 | 5518182 ~ 5519118 (-) |
| CI01000340_04598932_04627160 | NA | other | downstream | 431174 | 4598714 ~ 4627447 (-) |
| G488862 | NA | other | downstream | 493974 | 4507196 ~ 4518120 (-) |
| G488782 | NA | other | downstream | 1083787 | 4005805 ~ 4006448 (-) |
| G487884 | NA | other | downstream | 3187963 | 1895801 ~ 1902272 (-) |
| CI01000340_00787534_00791061 | NA | other | downstream | 4298826 | 786551 ~ 791409 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | upstream | 1050541 | 6095704 ~ 6194501 (-) |
| G489511 | NA | other | upstream | 1187708 | 6320457 ~ 6327372 (-) |
| G491712 | NA | other | upstream | 3666452 | 8799201 ~ 8799577 (-) |
| CI01000340_10025958_10028902 | SRSF3 | other | upstream | 4889143 | 10025656 ~ 10029589 (-) |
