Gene
RNA
| Item | Value |
|---|---|
| gene id | G487602 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 5142443 ~ 5150616 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU559447 | True | 1976 | lncRNA | 0.47 | 11 | 5142443 | 5150616 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_05105114_05112407 | NA | coding | upstream | 29730 | 5104359 ~ 5112713 (+) |
| CI01000340_04809014_04832590 | JAK1 | coding | upstream | 309853 | 4809014 ~ 4832590 (+) |
| CI01000340_04660938_04668996 | NA | coding | upstream | 473121 | 4659584 ~ 4669322 (+) |
| CI01000340_04564752_04566790 | NA | coding | upstream | 575287 | 4564611 ~ 4567156 (+) |
| CI01000340_04399692_04401164 | NA | coding | upstream | 740983 | 4399419 ~ 4401496 (+) |
| CI01000340_05165855_05175759 | NA | coding | downstream | 14630 | 5165246 ~ 5176372 (+) |
| CI01000340_05338225_05385755 | DOCK7 | coding | downstream | 187609 | 5338225 ~ 5385755 (+) |
| CI01000340_05433329_05446428 | KANK4 | coding | downstream | 282713 | 5433329 ~ 5446781 (+) |
| CI01000340_05646434_05651598 | NA | coding | downstream | 495021 | 5645637 ~ 5652345 (+) |
| CI01000340_05697468_05705929 | GHRHRB | coding | downstream | 546701 | 5697317 ~ 5706900 (+) |
| G487581 | NA | non-coding | upstream | 52770 | 5089469 ~ 5089673 (+) |
| G487580 | NA | non-coding | upstream | 59164 | 5083013 ~ 5083279 (+) |
| G487507 | NA | non-coding | upstream | 229941 | 4912279 ~ 4912502 (+) |
| G487505 | NA | non-coding | upstream | 232569 | 4909224 ~ 4909874 (+) |
| G487498 | NA | non-coding | upstream | 241708 | 4899887 ~ 4900735 (+) |
| G487638 | NA | non-coding | downstream | 1874 | 5152490 ~ 5152964 (+) |
| G487658 | NA | non-coding | downstream | 73710 | 5224326 ~ 5224700 (+) |
| G487709 | NA | non-coding | downstream | 393180 | 5543796 ~ 5573983 (+) |
| G487724 | NA | non-coding | downstream | 437830 | 5588446 ~ 5606729 (+) |
| G487775 | NA | non-coding | downstream | 505398 | 5656014 ~ 5670162 (+) |
| G487133 | NA | other | upstream | 1159898 | 3973915 ~ 3982545 (+) |
| CI01000340_02930635_02933799 | LSM2 | other | upstream | 2210643 | 2930635 ~ 2933935 (+) |
| CI01000340_00312480_00313262 | NA | other | upstream | 4829198 | 312212 ~ 313534 (+) |
| G489634 | NA | other | downstream | 1543605 | 6694221 ~ 6700788 (+) |
| G490645 | NA | other | downstream | 3888196 | 9038812 ~ 9043101 (+) |
| G490826 | NA | other | downstream | 3974568 | 9125184 ~ 9131397 (+) |
| G490839 | NA | other | downstream | 4084357 | 9234973 ~ 9237559 (+) |
| G490896 | NA | other | downstream | 4680857 | 9831473 ~ 9845052 (+) |
