G489329


Basic Information

Item Value
gene id G489329
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 6170437 ~ 6170693 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU561359
AAACAAAAAAAAGAATAAAACTATTAAATCATACAATCATGCTCCCTGACCTATACACAAATTAGAGAAGAAATTTTCTTAAATGTCTTTAAAAAAAAGCAGCAACGGCTTCTGAAGCTCTGGAGTTATTTTCCACAGAAAAAATACCTGCATTTTTGACATTTTTAGCCATTTATTTATAATTGATCACAAATATTACTTTTTGTTGTTCTTTTTCATAATCAAATTTTAATAAAACATATGCAAAATGTTATGTG

Function

NR:

description
immediate early response gene 5-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561359 True 257 lncRNA 0.26 1 6170437 6170693

Neighbor

gene id symbol gene type direction distance location
CI01000340_06033435_06039832 PIK3R3B, PIK3R3 coding upstream 130588 6032257 ~ 6039849 (+)
CI01000340_05967007_05972445 NA coding upstream 197848 5966716 ~ 5972589 (+)
CI01000340_05942559_05948192 NA coding upstream 221169 5941976 ~ 5949268 (+)
CI01000340_05875022_05877021 NA coding upstream 293139 5874587 ~ 5877298 (+)
CI01000340_05781697_05792066 POMGNT1, MGC81332, POMGNT1.S coding upstream 377759 5780852 ~ 5792678 (+)
CI01000340_06227847_06235507 GPBP1L1 coding downstream 57154 6227847 ~ 6235903 (+)
CI01000340_06237715_06245533 NA coding downstream 67022 6237715 ~ 6245762 (+)
CI01000340_06264637_06276320 ORC1 coding downstream 93944 6264637 ~ 6276803 (+)
CI01000340_06326491_06326891 NA coding downstream 155798 6326491 ~ 6327145 (+)
CI01000340_06327907_06340628 AP1M3 coding downstream 156793 6327486 ~ 6340644 (+)
G489254 NA non-coding upstream 72149 6097974 ~ 6098288 (+)
G489281 NA non-coding upstream 83380 6086686 ~ 6087057 (+)
G489274 NA non-coding upstream 93194 6077011 ~ 6077243 (+)
G489271 NA non-coding upstream 96494 6073741 ~ 6073943 (+)
G489229 NA non-coding upstream 159886 6000951 ~ 6010551 (+)
G489330 NA non-coding downstream 39 6170732 ~ 6170962 (+)
G489331 NA non-coding downstream 942 6171635 ~ 6171936 (+)
G489333 NA non-coding downstream 4320 6175013 ~ 6175396 (+)
G489379 NA non-coding downstream 100273 6270966 ~ 6285308 (+)
G489651 NA non-coding downstream 317516 6488209 ~ 6525984 (+)
CI01000340_04660938_04668996 NA other upstream 1505252 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 1768941 4399419 ~ 4401496 (+)
G487133 NA other upstream 2187892 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 3238637 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 5857192 312212 ~ 313534 (+)
G489634 NA other downstream 523528 6694221 ~ 6700788 (+)
G490645 NA other downstream 2868119 9038812 ~ 9043101 (+)
G490826 NA other downstream 2954491 9125184 ~ 9131397 (+)
G490839 NA other downstream 3064280 9234973 ~ 9237559 (+)
G490896 NA other downstream 3660780 9831473 ~ 9845052 (+)

Expression


Co-expression Network