G489330


Basic Information

Item Value
gene id G489330
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 6170732 ~ 6170962 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU561360
CGTAAACACAGATGGTTGCGACCCTGTATCTATGAGAGGAGAAAGAAAGAATGGTGATTCAATGATTCACAAAAAATAAGTCAATGACTGACTGTCTAATAACAAATTATATAGTAATTCTATATCTCTGGAAGAACTATTCCCATTCTTTATATCTCCAATGGACAATCCAGTCCAGTCCAATATAAACTCCAGAAATCTATCAGCAGAATTGCTTTAAATAAGCTGCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561360 True 231 lncRNA 0.35 1 6170732 6170962

Neighbor

gene id symbol gene type direction distance location
CI01000340_06033435_06039832 PIK3R3B, PIK3R3 coding upstream 130883 6032257 ~ 6039849 (+)
CI01000340_05967007_05972445 NA coding upstream 198143 5966716 ~ 5972589 (+)
CI01000340_05942559_05948192 NA coding upstream 221464 5941976 ~ 5949268 (+)
CI01000340_05875022_05877021 NA coding upstream 293434 5874587 ~ 5877298 (+)
CI01000340_05781697_05792066 POMGNT1, MGC81332, POMGNT1.S coding upstream 378054 5780852 ~ 5792678 (+)
CI01000340_06227847_06235507 GPBP1L1 coding downstream 56885 6227847 ~ 6235903 (+)
CI01000340_06237715_06245533 NA coding downstream 66753 6237715 ~ 6245762 (+)
CI01000340_06264637_06276320 ORC1 coding downstream 93675 6264637 ~ 6276803 (+)
CI01000340_06326491_06326891 NA coding downstream 155529 6326491 ~ 6327145 (+)
CI01000340_06327907_06340628 AP1M3 coding downstream 156524 6327486 ~ 6340644 (+)
G489329 NA non-coding upstream 39 6170437 ~ 6170693 (+)
G489254 NA non-coding upstream 72444 6097974 ~ 6098288 (+)
G489281 NA non-coding upstream 83675 6086686 ~ 6087057 (+)
G489274 NA non-coding upstream 93489 6077011 ~ 6077243 (+)
G489271 NA non-coding upstream 96789 6073741 ~ 6073943 (+)
G489331 NA non-coding downstream 673 6171635 ~ 6171936 (+)
G489333 NA non-coding downstream 4051 6175013 ~ 6175396 (+)
G489379 NA non-coding downstream 100004 6270966 ~ 6285308 (+)
G489651 NA non-coding downstream 317247 6488209 ~ 6525984 (+)
G489634 NA non-coding downstream 523259 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 1505547 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 1769236 4399419 ~ 4401496 (+)
G487133 NA other upstream 2188187 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 3238932 2930635 ~ 2933935 (+)
CI01000340_00312480_00313262 NA other upstream 5857487 312212 ~ 313534 (+)
G490645 NA other downstream 2867850 9038812 ~ 9043101 (+)
G490826 NA other downstream 2954222 9125184 ~ 9131397 (+)
G490839 NA other downstream 3064011 9234973 ~ 9237559 (+)
G490896 NA other downstream 3660511 9831473 ~ 9845052 (+)

Expression


Co-expression Network