G489748


Basic Information

Item Value
gene id G489748
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 6952200 ~ 6952437 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU561825
TATAAACATTTAAATCGTGGCTGTCATAACTGATTTATTCAAACATGCATTGAATATTGAAGAACATTAAAAATTATAATGAATATGTAACGGTGCATATATTTATCAGAATGCTGCTCTCTAGAGTTTATTTTTCTAGCTGACTAATAAGTTTATGGTCACTGAATATAGTTTTTCTGAGGTAAATGTGATGTTACGTGACATTGTTTACAAGCTGTTTTATTGACGTCTTTCCGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU561825 True 238 lncRNA 0.30 1 6952200 6952437

Neighbor

gene id symbol gene type direction distance location
CI01000340_06927893_06929574 NA coding upstream 22527 6927788 ~ 6929673 (+)
CI01000340_06769655_06778207 UHMK1 coding upstream 173993 6769655 ~ 6778207 (+)
CI01000340_06702811_06703207 NA coding upstream 248769 6702811 ~ 6703903 (+)
CI01000340_06677894_06691556 IL12RB2 coding upstream 260631 6677894 ~ 6691569 (+)
CI01000340_06656187_06669677 NA coding upstream 280731 6656022 ~ 6671469 (+)
CI01000340_07451476_07454866 RHCG, RHCGL1 coding downstream 498937 7451374 ~ 7455412 (+)
CI01000340_07482030_07483694 NA coding downstream 529593 7482030 ~ 7483902 (+)
CI01000340_07486593_07487826 NA coding downstream 534040 7486477 ~ 7487826 (+)
CI01000340_07641488_07649078 NA coding downstream 688709 7641146 ~ 7649494 (+)
CI01000340_07692812_07697115 TMEM45A coding downstream 740375 7692812 ~ 7697333 (+)
G489744 NA non-coding upstream 19007 6932626 ~ 6933193 (+)
G489740 NA non-coding upstream 28037 6923927 ~ 6924163 (+)
G489643 NA non-coding upstream 44376 6843837 ~ 6907824 (+)
G489640 NA non-coding upstream 152866 6791590 ~ 6799334 (+)
G489668 NA non-coding upstream 161388 6790519 ~ 6790812 (+)
G489759 NA non-coding downstream 26434 6978871 ~ 6979120 (+)
G489763 NA non-coding downstream 33557 6985994 ~ 6988768 (+)
G489766 NA non-coding downstream 42926 6995363 ~ 6995684 (+)
G489950 NA non-coding downstream 49866 7002303 ~ 7002824 (+)
G489956 NA non-coding downstream 61281 7013718 ~ 7014346 (+)
G489634 NA other upstream 251412 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 2287015 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 2550704 4399419 ~ 4401496 (+)
G487133 NA other upstream 2969655 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 4020400 2930635 ~ 2933935 (+)
G490645 NA other downstream 2086375 9038812 ~ 9043101 (+)
G490826 NA other downstream 2172747 9125184 ~ 9131397 (+)
G490839 NA other downstream 2282536 9234973 ~ 9237559 (+)
G490896 NA other downstream 2879036 9831473 ~ 9845052 (+)
G492194 NA other downstream 3699246 10651683 ~ 10652694 (+)

Expression


Co-expression Network