G489950


Basic Information

Item Value
gene id G489950
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7002303 ~ 7002824 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU562059
GTAATGTGTAATTGCATTACTCATCACAAATGTAGTGGAGTAAAAAGTACATTTACTTGTTCAAAAATGTAGTCAAGTAGAGAGTAAAAGTTGCCAATATCTTTGATACTCAGTACAACTACAAAGTAGCCAAAAAGATACTTAAGTACAGTAACTAATTACATTTACTCAAATACTTTACACCTCTGTCTAACCATTATATAACACTCAATTAACATAGCATAAAAAGATTCCATATCAGTTCCATATTAGTGTGACACAGGAAATTACATCATCTGGATCCTTTATTGAGCATAATGCGAAGAAAGCTAAGCTTTCAGTTTTTTCTTTCTCTATTTTTTCAATCATGTTACCCAAGTTATTGCGAAAAAATATTACCATTTTACCAAAGGTATTGCTACAATTGTTTGCTATAAAATAATGAATTTCACTAATCACAGTTTTCAAACTGAAACTTTCAATATAAAATGAAACAGCATATAATAATATTTAGTTTGACATCCTGATGTGATATTTATGCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562059 True 522 lncRNA 0.29 1 7002303 7002824

Neighbor

gene id symbol gene type direction distance location
CI01000340_06927893_06929574 NA coding upstream 72630 6927788 ~ 6929673 (+)
CI01000340_06769655_06778207 UHMK1 coding upstream 224096 6769655 ~ 6778207 (+)
CI01000340_06702811_06703207 NA coding upstream 298872 6702811 ~ 6703903 (+)
CI01000340_06677894_06691556 IL12RB2 coding upstream 310734 6677894 ~ 6691569 (+)
CI01000340_06656187_06669677 NA coding upstream 330834 6656022 ~ 6671469 (+)
CI01000340_07451476_07454866 RHCG, RHCGL1 coding downstream 448550 7451374 ~ 7455412 (+)
CI01000340_07482030_07483694 NA coding downstream 479206 7482030 ~ 7483902 (+)
CI01000340_07486593_07487826 NA coding downstream 483653 7486477 ~ 7487826 (+)
CI01000340_07641488_07649078 NA coding downstream 638322 7641146 ~ 7649494 (+)
CI01000340_07692812_07697115 TMEM45A coding downstream 689988 7692812 ~ 7697333 (+)
G489766 NA non-coding upstream 6619 6995363 ~ 6995684 (+)
G489763 NA non-coding upstream 13535 6985994 ~ 6988768 (+)
G489759 NA non-coding upstream 23183 6978871 ~ 6979120 (+)
G489748 NA non-coding upstream 49866 6952200 ~ 6952437 (+)
G489744 NA non-coding upstream 69110 6932626 ~ 6933193 (+)
G489956 NA non-coding downstream 10894 7013718 ~ 7014346 (+)
G489978 NA non-coding downstream 26068 7028892 ~ 7029208 (+)
G489985 NA non-coding downstream 31805 7034629 ~ 7034959 (+)
G489984 NA non-coding downstream 32820 7035644 ~ 7035842 (+)
G490008 NA non-coding downstream 82153 7084977 ~ 7085298 (+)
G489634 NA other upstream 301515 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 2337118 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 2600807 4399419 ~ 4401496 (+)
G487133 NA other upstream 3019758 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 4070503 2930635 ~ 2933935 (+)
G490645 NA other downstream 2035988 9038812 ~ 9043101 (+)
G490826 NA other downstream 2122360 9125184 ~ 9131397 (+)
G490839 NA other downstream 2232149 9234973 ~ 9237559 (+)
G490896 NA other downstream 2828649 9831473 ~ 9845052 (+)
G492194 NA other downstream 3648859 10651683 ~ 10652694 (+)

Expression


Co-expression Network