G490215


Basic Information

Item Value
gene id G490215
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7265768 ~ 7303052 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU562349
CTACAAATTCATGCTGTTGCTTGATTAAGAGCAACACTTTACATAAAAATAGCGTGCATAAGAAATAATGGAACTCCACGTTGACAGGAATACAAGGCGGCAAACAGGACAAAAGCTAATGTGCGCATGTCATAAAGTCATTCTGATTAAAAGCGCCGCCACATGTAAACACCATATCGGATAAGATAACGTCTCATGTAAACAGTCCACAGAAAAACACTCAGAGATTATCACCAAGGCAAATCAAGACTTCGCGATGTGTGTGAGTGTGTGTGTGTCTTAAATAGTGTGAGTGTGATGCGGTGCAGGTGTGTGTGCAATCAGTCCCAGGAATGAGGGCCCATGGGAAACGTAGTCCGAATGAGAACTGATCAGTATTCCAGTGATGGCTCCCTCTGGCGGTCCGGAGGAAAGGCCGAGGGAGCCACATTCGTGACAGTTACCATGCCATCATTATTAAGAAATTCCAAGTATCATACGTATTGCTTTTTTTTTTTTTTTTTATATCTCAATATTGTGAGAAAGAAAGAAACTAAATAATGACAAAATATTACTTTGATTTTTTTTTTTTTTTTCAGTTCACAACTAGTGATAACCACTTGTCCTTGCTGAAAATCCATTCTAAAGAATGGAGAGTGTCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562349 True 642 lncRNA 0.40 2 7265768 7303052

Neighbor

gene id symbol gene type direction distance location
CI01000340_07094782_07128154 BRINP3A.1 coding downstream 137526 7094491 ~ 7128242 (-)
CI01000340_06980994_06986987 RGS8 coding downstream 277354 6980923 ~ 6988414 (-)
CI01000340_06967769_06969169 RGS16 coding downstream 296560 6967002 ~ 6969208 (-)
CI01000340_06943742_06951136 RGS5, RGS5A coding downstream 314446 6943742 ~ 6951322 (-)
CI01000340_06795551_06907442 NOS1AP, C1H1ORF226, C18H1ORF226, C6H1ORF226 coding downstream 358326 6795551 ~ 6907442 (-)
CI01000340_07316270_07338395 BRINP3A.2, BRINP3 coding upstream 12399 7315451 ~ 7339343 (-)
CI01000340_07347497_07355645 NA coding upstream 43768 7346820 ~ 7356850 (-)
CI01000340_07543307_07544545 HES1, HER6 coding upstream 239967 7543019 ~ 7544752 (-)
CI01000340_07546144_07547567 NA coding upstream 242627 7545679 ~ 7547567 (-)
CI01000340_07651745_07673195 OPA1 coding upstream 347936 7650988 ~ 7673671 (-)
G490134 NA non-coding downstream 111989 7153498 ~ 7153779 (-)
G490132 NA non-coding downstream 116467 7148959 ~ 7149301 (-)
G490130 NA non-coding downstream 119158 7146372 ~ 7146610 (-)
G490126 NA non-coding downstream 134068 7131441 ~ 7131700 (-)
G490101 NA non-coding downstream 181069 7084345 ~ 7084699 (-)
G491147 NA non-coding upstream 112358 7415410 ~ 7415669 (-)
G491154 NA non-coding upstream 135772 7438824 ~ 7439035 (-)
G491168 NA non-coding upstream 148101 7451153 ~ 7456580 (-)
G491179 NA non-coding upstream 183396 7486448 ~ 7488082 (-)
G491180 NA non-coding upstream 201697 7504749 ~ 7504955 (-)
G489511 NA other downstream 938396 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 1045126 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 1940624 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 2606707 4598714 ~ 4627447 (-)
G488862 NA other downstream 2669507 4507196 ~ 4518120 (-)
G491712 NA other upstream 1496149 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 2718840 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 3054132 10356758 ~ 10359856 (-)
G493109 NA other upstream 4370694 11673746 ~ 11677994 (-)
G493266 NA other upstream 4764125 12067177 ~ 12116900 (-)

Expression


Co-expression Network