G491168


Basic Information

Item Value
gene id G491168
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7451153 ~ 7456580 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU563446
GCAATTTATTTGCATTTTCACAGGGTTGTCTAAAGGGGGGAATTATAACCCTCAACCTAGTTCCTTTAATCAGAGTAGAAGTTCACCAACAATCAGTCAGCCAATTACTTTCTGACCAAGTGTAAACAGCTCTTGCAGTAAGACAAACTGGTTGTACAATATTATTACAACAGTACTGTAGATGATGATTATAATGAAAATAATGAAACAGATGAAAAATGATAGATAAAAATGGGGAGATTCGTAAATGAATTCATGTAAGATAAACAGCTAACAATTCAGCAAACAAGAAAAATAGGGTGTGTGTTGTCTGTTTGCAGTTAAATCCCATGCATTTGAATGTCTTTTATAATTGCATGACATTTTATTTTTATTAAAATTATTTAAAATGTCTTATACAGTACAGGTTGCATCTGTCAATTTTAAGGGCAGACATCAACATATAATCTAGTCTGCATAGAGGGCATATTATCTCAAGGTCTCCAGCTAAAATCGCTATCTTACTTGTTGCCTCCTCCCTATAGTTACCACTTTTTAAGTGCTTCCTTTTGGCCAATAGTTTAGGTCAATTAGGGCAAAAAACACCAGCTGTGTAGCTAAACTGGTCCATAGAGCATGTTCTCTTTTCTTAGTTTTATGCATGTACATTGATTTTTTTGTTTTGTTTGTTTTTACAGCATCCCCAACTCCAATCCTAACCATAACTTTACCCATGACAGCTTTCATAAACAAAGAAATGTCACAAACATTAATTTCTCTGGTGTGACAAATACAAGTTCCCAATGTTAGAAAGGTTTGGGGCTGAGAAAGAATGAAGGGAGGACAAAAGAGAATATCAATGTTAGTAGGCAACAATTTTAGTGACAAGAATTGCAAATAATGATTCCAAGATATCATTTAGAGAGATCTTATGCTGTCCGATGGGAGTGACCACTCATTATTTTAATAAATTGGACTTTTGCCCAAATAGATTTGATGGATCAGTAGCTCTCAACATTCCAGACACTAGGCAGTTTCTTTTGCTCACAATGAGTTCCTTCAAATAGATGCCTCAGGCAAGTATGCAAATTCACCTGTCAAAGTCACATGTTAAATCATCAACATCCTTCAGCATTAAAAGTATTAAAAAACAATGAAATCGATATATGATAAAACTAATTGACTTTATTGGGTAGGTTTTATCTCTATGTTAAATAACATGGGTAGTTCAATCAATCTTGTTCTTATTCTTTACACTGAACAGATTAATTATATGATGATTATTAACAATACAATGATAAAACTCGAATCAGTATAGATAGTCACATTACAAACAAAGATCATTTGAAGTTTCATCATTGGTGTAGGAATGTAAAGAATTCCAAAAGGAAATAACCCCACTGTTTGGAAAGGTTTTTGTGGAAGCACTAGCAGCAGTGGCAACACTGGTTATTCAGGTGCTATAGACAAGATGCCTTAGGATTATGACATTGTATAACCCACAGCACATGACTGACTTAAAAATTTCCGTTGAGTAGTTTATCTAATCAGTCTGTGAATCCTTCATGATTCTTATTCAATCATCATTCAGAGTTGAAGTTTTTCAGGAAGTGGAGTTTTAAAGCGGTTTTCCCCCTACACATTACTTCGTTGATATACATCTGCCATGCTTCTTACGTGGTTCATGTCTGGGTGTCTAGAGGCAGGAATATCATTATCCTCATCCTCTGGAACCTCCCAGTAAACTTCATCATCAAAACAGTTGCCGTCTGCTGGGTCTCCCCAGATTGGCAGCTTTAGTATCCCTCCAACCAAAGCTCCACCTGCAAGGCCAAATGCTATTGCTACACAGAGACCTGCTGCCTGGTAACCACCCTGAGTGCTGGCTGTCCTGTTAGCAATGGCATCCTTGAAGTCGAAAGTGTTAATCAACCCTTCTTTTCCATAAACTGACTCACTGGCAGAAGCTGCAGTAATAGCCCCAACAATACCACCTATAACTCCAGGCATTGCATGCAGGTTATGTATACCACAAGTGTCTTGTATTTTCAGAGTTTTTTCCATAAAAGGAGTCAGAAACAGATATCCAAGTGTGGTAACAATGCCTGAACAGAATCCCACTATCAGAGAGCCGTAAGGTGTAATCATGAACTCTGAAGCCGTTCCCATCGCAACACCACCAGCCAAGGTAGCATTCTGAATATGTACCATGTCAAGCTTTCCATGTTTCTGTGAGAGACTTGAAATGGCGAAGGTAGTGAGAACTGATGAGGCCAGTGCGAGGTAGGTATTTATAACAGCTCTGTGCTGCCCATCTCCATGATCTGCAATAGCAGAATTAAAACTCGGCCAGAACATCCAAAGAAAGAGAGTGCCAATCATTGCAAACACATCGGAGTGATATACGGATCCTTGTAAATGTTTGGTTTGAGATAGCAATGGTCGATATAAGATCCAAGATATGGTCAAACCATAATATGCTCCAAAAGTGTGGATGACCATAGAACCACCAGCATCTTTCGCATGAAGGAGTTCTAAAATGATATACTCCTCAACTGCAAACAGGGTGACTCCAAACAGAGTAAGAACCATCAGCTGCACTGGACTGACCTTTCCAAGACAAGCGCCATATGCAATGAGACAGCCAGCCACACAGAAATCTGCATTGATGAGGTTCTCAATCCCAATTTTTATTTTCCAGTCATCACTGTCAAGATGATGAAACCAGCCTTGCATCAGCAGAGCCCATTGAATTCCAAAAGCTGCGATGAGAAAATTGAAGCCAACTCCACCGAAACTATAACGCTTAAGGAAGGTCATGAGAAATCCAAAACCAACAAAGATCATCACATGCACATCCTGAAAACCTGAGGAAACATAAAAAGAAGAATGTCTGAGTGTGAATATGTACATGATTATGAGGAAAAAAGTTGCAGTAAATTTAACAGATTGGAGCGAAACATGCTGGTGATGTTACTTACTTGGATATCTATAGTAAAAGTCATTCTCTAAATGCGTGGAAATATTTTTACTTCTCCTGTGTTCGATCCAATGGGTGTCAGACTCCTCATTATAACGAATGAAAACACCAAACAGGATGATCATAGCAATCTGCCAGACAAAGCAGACTACTGGGAGACTGATTCGAATATTGGTGTTTTTGGTCATTTTAAGTCTTGCAGATTTTCCCGAAGAGAGGTTCTGGAGATGACAGTGAAATTCCTTTCAATAGAAACATGTGACTCACCTGTTGTCATAAAGGTTTTATAGTGAGGTCTGGAGGTGTGTCATGACATAATCAACTAACCACACCTACAAAGACATACAAAGACATAAATCACACACACTTATGACAAAAAGTTGTTGACAAAAAGGAAGAGACGGTATCTGTGTTCTTATGTAATGGTTTGAAGTGAACTGAATACAAAATAGGCAAACACATAGCAAACAATTTCAAACATTAACATTTTAGGCATGTTAGTATTTTCCCC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU563446 True 3470 lncRNA 0.38 10 7451153 7456580

Neighbor

gene id symbol gene type direction distance location
CI01000340_07347497_07355645 NA coding downstream 94303 7346820 ~ 7356850 (-)
CI01000340_07316270_07338395 BRINP3A.2, BRINP3 coding downstream 111810 7315451 ~ 7339343 (-)
CI01000340_07094782_07128154 BRINP3A.1 coding downstream 322911 7094491 ~ 7128242 (-)
CI01000340_06980994_06986987 RGS8 coding downstream 462739 6980923 ~ 6988414 (-)
CI01000340_06967769_06969169 RGS16 coding downstream 481945 6967002 ~ 6969208 (-)
CI01000340_07543307_07544545 HES1, HER6 coding upstream 86439 7543019 ~ 7544752 (-)
CI01000340_07546144_07547567 NA coding upstream 89099 7545679 ~ 7547567 (-)
CI01000340_07651745_07673195 OPA1 coding upstream 194408 7650988 ~ 7673671 (-)
CI01000340_07778322_07787234 NA coding upstream 321163 7777743 ~ 7787463 (-)
CI01000340_07994499_07999442 CTH, CGL coding upstream 537919 7994499 ~ 7999651 (-)
G491154 NA non-coding downstream 12118 7438824 ~ 7439035 (-)
G491147 NA non-coding downstream 35484 7415410 ~ 7415669 (-)
G490215 NA non-coding downstream 148101 7265768 ~ 7303052 (-)
G490134 NA non-coding downstream 297374 7153498 ~ 7153779 (-)
G490132 NA non-coding downstream 301852 7148959 ~ 7149301 (-)
G491179 NA non-coding upstream 29868 7486448 ~ 7488082 (-)
G491180 NA non-coding upstream 48169 7504749 ~ 7504955 (-)
G491183 NA non-coding upstream 52399 7508979 ~ 7509190 (-)
G491203 NA non-coding upstream 73230 7529810 ~ 7530032 (-)
G491205 NA non-coding upstream 79850 7536430 ~ 7536656 (-)
G489511 NA other downstream 1123781 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 1230511 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 2126009 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 2792092 4598714 ~ 4627447 (-)
G488862 NA other downstream 2854892 4507196 ~ 4518120 (-)
G491712 NA other upstream 1342621 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 2565312 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 2900604 10356758 ~ 10359856 (-)
G493109 NA other upstream 4217166 11673746 ~ 11677994 (-)
G493266 NA other upstream 4610597 12067177 ~ 12116900 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032159 rhcgl1 coding NC_007117.7 CM002890.2 36381709 ~ 36391687 (+)