Gene
RNA
| Item | Value |
|---|---|
| gene id | G490290 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 7496442 ~ 7502162 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU562430 | False | 1008 | lncRNA | 0.35 | 2 | 7496442 | 7502162 |
| TU562431 | True | 1008 | lncRNA | 0.35 | 2 | 7496442 | 7502162 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_07486593_07487826 | NA | coding | upstream | 8616 | 7486477 ~ 7487826 (+) |
| CI01000340_07482030_07483694 | NA | coding | upstream | 12540 | 7482030 ~ 7483902 (+) |
| CI01000340_07451476_07454866 | RHCG, RHCGL1 | coding | upstream | 41030 | 7451374 ~ 7455412 (+) |
| CI01000340_06927893_06929574 | NA | coding | upstream | 566769 | 6927788 ~ 6929673 (+) |
| CI01000340_06769655_06778207 | UHMK1 | coding | upstream | 718235 | 6769655 ~ 6778207 (+) |
| CI01000340_07641488_07649078 | NA | coding | downstream | 138984 | 7641146 ~ 7649494 (+) |
| CI01000340_07692812_07697115 | TMEM45A | coding | downstream | 190650 | 7692812 ~ 7697333 (+) |
| CI01000340_07698442_07700739 | NA | coding | downstream | 196280 | 7698442 ~ 7700739 (+) |
| CI01000340_07701724_07717637 | CHD1L | coding | downstream | 199224 | 7701386 ~ 7717852 (+) |
| CI01000340_07721395_07728614 | TRAF3IP2L | coding | downstream | 219233 | 7721395 ~ 7728752 (+) |
| G490294 | NA | non-coding | upstream | 1234 | 7494679 ~ 7495208 (+) |
| G490181 | NA | non-coding | upstream | 248018 | 7248217 ~ 7248424 (+) |
| G490045 | NA | non-coding | upstream | 342919 | 7153294 ~ 7153523 (+) |
| G490013 | NA | non-coding | upstream | 404309 | 7091867 ~ 7092133 (+) |
| G490008 | NA | non-coding | upstream | 411144 | 7084977 ~ 7085298 (+) |
| G490347 | NA | non-coding | downstream | 16204 | 7518366 ~ 7518584 (+) |
| G490353 | NA | non-coding | downstream | 30318 | 7532480 ~ 7532700 (+) |
| G490361 | NA | non-coding | downstream | 50452 | 7552614 ~ 7553152 (+) |
| G490370 | NA | non-coding | downstream | 63463 | 7565625 ~ 7565860 (+) |
| G490377 | NA | non-coding | downstream | 74124 | 7576286 ~ 7576575 (+) |
| G489634 | NA | other | upstream | 795654 | 6694221 ~ 6700788 (+) |
| CI01000340_04660938_04668996 | NA | other | upstream | 2831257 | 4659584 ~ 4669322 (+) |
| CI01000340_04399692_04401164 | NA | other | upstream | 3094946 | 4399419 ~ 4401496 (+) |
| G487133 | NA | other | upstream | 3513897 | 3973915 ~ 3982545 (+) |
| CI01000340_02930635_02933799 | LSM2 | other | upstream | 4564642 | 2930635 ~ 2933935 (+) |
| G490645 | NA | other | downstream | 1536650 | 9038812 ~ 9043101 (+) |
| G490826 | NA | other | downstream | 1623022 | 9125184 ~ 9131397 (+) |
| G490839 | NA | other | downstream | 1732811 | 9234973 ~ 9237559 (+) |
| G490896 | NA | other | downstream | 2329311 | 9831473 ~ 9845052 (+) |
| G492194 | NA | other | downstream | 3149521 | 10651683 ~ 10652694 (+) |
