G490398


Basic Information

Item Value
gene id G490398
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7618416 ~ 7618638 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU562549
TATCGAGCCATTTTGCCACACCTAATTCTGAAACTCATATCAGATGTAAATTTTCACCACTTCTGACGCATGTGCAAAGTTTCATGAGTTTTTGAGCATGTTTAGGCCCTCAAAAATGCGATTCATTTCAGAGAAAAAGAAGAATTGACTGAGCAATTACAATAGGGTCCTCACACCATCGGTGCTCAGGCCCTAAAGTCTTGCTGAACTTAAAGGGGTAGTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU562549 True 223 lncRNA 0.40 1 7618416 7618638

Neighbor

gene id symbol gene type direction distance location
CI01000340_07486593_07487826 NA coding upstream 130590 7486477 ~ 7487826 (+)
CI01000340_07482030_07483694 NA coding upstream 134514 7482030 ~ 7483902 (+)
CI01000340_07451476_07454866 RHCG, RHCGL1 coding upstream 163004 7451374 ~ 7455412 (+)
CI01000340_06927893_06929574 NA coding upstream 688743 6927788 ~ 6929673 (+)
CI01000340_06769655_06778207 UHMK1 coding upstream 840209 6769655 ~ 6778207 (+)
CI01000340_07641488_07649078 NA coding downstream 22508 7641146 ~ 7649494 (+)
CI01000340_07692812_07697115 TMEM45A coding downstream 74174 7692812 ~ 7697333 (+)
CI01000340_07698442_07700739 NA coding downstream 79804 7698442 ~ 7700739 (+)
CI01000340_07701724_07717637 CHD1L coding downstream 82748 7701386 ~ 7717852 (+)
CI01000340_07721395_07728614 TRAF3IP2L coding downstream 102757 7721395 ~ 7728752 (+)
G490377 NA non-coding upstream 41841 7576286 ~ 7576575 (+)
G490370 NA non-coding upstream 52556 7565625 ~ 7565860 (+)
G490361 NA non-coding upstream 65264 7552614 ~ 7553152 (+)
G490353 NA non-coding upstream 85716 7532480 ~ 7532700 (+)
G490347 NA non-coding upstream 99832 7518366 ~ 7518584 (+)
G490399 NA non-coding downstream 1588 7620226 ~ 7620474 (+)
G490401 NA non-coding downstream 14116 7632754 ~ 7632973 (+)
G490289 NA non-coding downstream 52786 7671424 ~ 7672360 (+)
G490417 NA non-coding downstream 56417 7675055 ~ 7675269 (+)
G490448 NA non-coding downstream 113380 7732018 ~ 7732811 (+)
G489634 NA other upstream 917628 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 2953231 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 3216920 4399419 ~ 4401496 (+)
G487133 NA other upstream 3635871 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 4686616 2930635 ~ 2933935 (+)
G490645 NA other downstream 1420174 9038812 ~ 9043101 (+)
G490826 NA other downstream 1506546 9125184 ~ 9131397 (+)
G490839 NA other downstream 1616335 9234973 ~ 9237559 (+)
G490896 NA other downstream 2212835 9831473 ~ 9845052 (+)
G492194 NA other downstream 3033045 10651683 ~ 10652694 (+)

Expression


Co-expression Network