G491325


Basic Information

Item Value
gene id G491325
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7782920 ~ 7808176 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU563616
GGACTGCTATTTTTATAATACATGGAGTTTCTGCCTATGTAGAGCTTTCCAAATCGGTCACTTACAATGTCTTATTTCAGTTGGGATGCAGTAGACAGTTGACAGCCTCACTAGGTTTTGGAACAGAGTTTGTATCTCCAGTAGAGAGGGGAAAAAGACTCAATGTCATTGTGCATGTGATTCTACACTGTATGACAGTAAACAAACATAAACAAAAGAAGTATATGGTACTCACAGTTGACTGTGACTCTCACGGTCTTAGTGTCAGGTGAAGCAATGTCGTTTTCGGCGCCGCACTCATAGTCCCCTGCTTGATCCCGAGTGATGCCTGTGATATTTAAATACTCCCCACTTTCATACTTCCTGGCTGATGGGGTGATGTGTCTCCAAGAGATTTTGGGCTCTGGTTTCCCACTGGCTGTGCAGATGAGTGAAACATTGCTGCCTTCGTTTACTGTAATGTCCGATGAAATGTCATAGATTTTGGGAGGAACTTTTACAATTAACTGAATGAGCTTTGGGCGTAGGTTACGTTCACTCTGTATTGAGCAGGTGTACAATCCCTCATCTGTTACATCCACTTTCTGTATCTGTAAGCTGTATTCATGTTTATCCCCCACATTCGATACGATGGACACACGAGGATCCCCTGACCACTTGTCATTCCCTGCGTAAATGATACTGGAACGGTTCAACCATGCTCCTTTTGAGATCCCATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU563616 True 719 lncRNA 0.44 3 7782920 7808176

Neighbor

gene id symbol gene type direction distance location
CI01000340_07651745_07673195 OPA1 coding downstream 109249 7650988 ~ 7673671 (-)
CI01000340_07546144_07547567 NA coding downstream 235353 7545679 ~ 7547567 (-)
CI01000340_07543307_07544545 HES1, HER6 coding downstream 238168 7543019 ~ 7544752 (-)
CI01000340_07347497_07355645 NA coding downstream 426070 7346820 ~ 7356850 (-)
CI01000340_07316270_07338395 BRINP3A.2, BRINP3 coding downstream 443577 7315451 ~ 7339343 (-)
CI01000340_07994499_07999442 CTH, CGL coding upstream 186323 7994499 ~ 7999651 (-)
CI01000340_08007878_08016645 CTH coding upstream 199521 8007697 ~ 8017282 (-)
CI01000340_08020667_08025048 NIT2 coding upstream 212279 8020455 ~ 8025048 (-)
CI01000340_08029268_08031877 NA coding upstream 220906 8029082 ~ 8032004 (-)
CI01000340_08036162_08043659 PLCXD1 coding upstream 227152 8035328 ~ 8044456 (-)
CI01000340_07778322_07787234 NA non-coding downstream 1349 7777743 ~ 7787463 (-)
G491216 NA non-coding downstream 49416 7731846 ~ 7733504 (-)
G491299 NA non-coding downstream 80214 7701612 ~ 7702706 (-)
G491254 NA non-coding downstream 169751 7612858 ~ 7613169 (-)
G491249 NA non-coding downstream 173985 7608707 ~ 7608935 (-)
G491355 NA non-coding upstream 32017 7840193 ~ 7841121 (-)
G491362 NA non-coding upstream 45900 7854076 ~ 7855024 (-)
G491363 NA non-coding upstream 47046 7855222 ~ 7855849 (-)
G491391 NA non-coding upstream 79748 7887924 ~ 7888971 (-)
G491392 NA non-coding upstream 82077 7890253 ~ 7892742 (-)
G489511 NA other downstream 1455548 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 1562278 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 2457776 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 3123859 4598714 ~ 4627447 (-)
G488862 NA other downstream 3186659 4507196 ~ 4518120 (-)
G491712 NA other upstream 991025 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 2213716 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 2549008 10356758 ~ 10359856 (-)
G493109 NA other upstream 3865570 11673746 ~ 11677994 (-)
G493266 NA other upstream 4259001 12067177 ~ 12116900 (-)

Expression


Co-expression Network