G491391


Basic Information

Item Value
gene id G491391
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7887924 ~ 7888971 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU563685
TTGCTGTCTTACTGCCTCTAGTGATCATTTCTGTTGGAAACTGCAGTGATATGTACGTATTGGTACGTATTTTGCGACTTGCAAAAATGTTCCCACAGGTACATCTTTCCATGAGACCAGGTTGCAGCCTTTTTTCTGGAGCTTAAATTTTTTTTTGTTTATGGAGTTAACTTAACTGAGGTTTGGAGACGGGCCAGCCTCAACCAATCACCTGACTTCTCAAAACCTTCTTATATCGGGCAGCCCCCTACAGTACTGTTTGTCTCATTCTCTCGAACCCTCCCTTCCCCTCCTTCTCTCATCCATTCAATCCTTACCATCCCCTGTTCTATTCCCTTCCAGGTTGTATCGGGGGGATCCTAATCACTCGGCCTACATTTAACTGAGATGATGCCCCCACTCTGAGTCTCCCTGCCGCCTACACCATGCCCGGATCAACCTGATAACCATCCCTTTCCCCCTTCCTCTTCATCCTCTCCCTATTCATCCCTAACTTTCTTTAATAAATAATTCTCTAGCATTTATGGTTGTGGTCCTTGCTTGTGAATAGAATAGCAGAGTAGATCAAGTAAAACGAGTGAGTAAATAATGACAGAATTTTTATTTTTGGGTAAACTGTCTCTTTAAGAGCAACCTCTGCCCTCATCATTTCAGCCTATATGTTAATCAGGGCAGTTTTTCTGTGCAAGTTTCATTATAGAGATAACATAAAATGCTTGGTATTTGAATGAAGCTAACCGTTAGTGCTAATGACCAGCAGGATTAATTAGCGCGAGTAGGATGGGCAGCTCGGAGAGCAGTCTTTCCCTCATTAATCCACTCGCAGGTGTTCTTCTGCCACTCTCTCCCCCTCCGTCTGCACATGGAGAAGATCGACGAGAAGCAAACTCACACCAATTCAATCTTATTAGTCCTCTGCAGAAATCACATCCCTGTAAGAACCTCCAGTAGAGGACAGCTGTAGATAAGAGGAGCACGAGACTCTGAAACACAAAGGAAATGAGGAAATTGTGCAAACCGGGAGAACTTTTGTGTGAAGGTCTTATCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU563685 True 1048 lncRNA 0.44 1 7887924 7888971

Neighbor

gene id symbol gene type direction distance location
CI01000340_07778322_07787234 NA coding downstream 100461 7777743 ~ 7787463 (-)
CI01000340_07651745_07673195 OPA1 coding downstream 214253 7650988 ~ 7673671 (-)
CI01000340_07546144_07547567 NA coding downstream 340357 7545679 ~ 7547567 (-)
CI01000340_07543307_07544545 HES1, HER6 coding downstream 343172 7543019 ~ 7544752 (-)
CI01000340_07347497_07355645 NA coding downstream 531074 7346820 ~ 7356850 (-)
CI01000340_07994499_07999442 CTH, CGL coding upstream 105528 7994499 ~ 7999651 (-)
CI01000340_08007878_08016645 CTH coding upstream 118726 8007697 ~ 8017282 (-)
CI01000340_08020667_08025048 NIT2 coding upstream 131484 8020455 ~ 8025048 (-)
CI01000340_08029268_08031877 NA coding upstream 140111 8029082 ~ 8032004 (-)
CI01000340_08036162_08043659 PLCXD1 coding upstream 146357 8035328 ~ 8044456 (-)
G491363 NA non-coding downstream 32075 7855222 ~ 7855849 (-)
G491362 NA non-coding downstream 32900 7854076 ~ 7855024 (-)
G491355 NA non-coding downstream 46803 7840193 ~ 7841121 (-)
G491325 NA non-coding downstream 79748 7782920 ~ 7808176 (-)
G491392 NA non-coding upstream 1282 7890253 ~ 7892742 (-)
G491393 NA non-coding upstream 3838 7892809 ~ 7894303 (-)
G491394 NA non-coding upstream 6622 7895593 ~ 7895796 (-)
G491396 NA non-coding upstream 7945 7896916 ~ 7914183 (-)
G491402 NA non-coding upstream 28994 7917965 ~ 7918199 (-)
G489511 NA other downstream 1560552 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 1667282 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 2562780 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 3228863 4598714 ~ 4627447 (-)
G488862 NA other downstream 3291663 4507196 ~ 4518120 (-)
G491712 NA other upstream 910230 8799201 ~ 8799577 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 2132921 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 2468213 10356758 ~ 10359856 (-)
G493109 NA other upstream 3784775 11673746 ~ 11677994 (-)
G493266 NA other upstream 4178206 12067177 ~ 12116900 (-)

Expression


Co-expression Network