G490465


Basic Information

Item Value
gene id G490465
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 7959672 ~ 7962143 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU562624
AGAGGACATCAGTTCATCAGTTATGCTAAACAGCAGGTTATATTCCTGGCACTCTGCAAACACATTTGTGATGTTTTATACAATATTAGAAGTATAAGAATTAATATTTACGACTAGTAAGTTGTTAAAAGAATATATTGTCAAAACAAAAAAAAACTCTGTCCTTACAAAATATGTGTGCCTTTGTGCCTCAAATTCTTTGAAACCAGCTTAAATCCCCAGGACACTAAAAATTTTTGCTGTAATGATTTTACGCCTTTCCGATTAAAAGAAAATAAGCGAGGGAGGTGCCAAAGCACTATCTGGGAAAAAGGGAGAGGCAATAATGTATTTTCTTAGAGGTCAGAGCTCTATGAAATCAGTCAATGTGAAGAGGTGGCGTGACCAGTAAATACATTTGGAAGATTGCAAGAAATTGCTAGTATTCTCTATCCAATAAAAAGAGCTTTTGGCAAATCCAAATAACAACCTCAGAGAACATCAGAGAAAACACTGATTTCTGATTGCTCTGGAAATTTTATGGTATTTGCAAGATTCAATAGTTGTCAGTGGGAGCCGGAATACTTTTGTAAATGGATTTAACATTTGACATATGCTCTGAGGCAGTGATTACAGAGTAAAATTAATGAATCTGACATGGGACTTAATTAATAGTGAAATGAACGTGGCTCAGGATGCACTGTCAGATGCCTAGTCGTGATTAACTTGCCGTTGTGCACTTGAGTAGCTGCTGAATAGGGCAATGGAAAATAGTATGATTGTATAATATTTCACAGCTTAATTAGCTGGTGCATCATGAGTACAAAGCAGGTCTGTGATCAGCTCAAATGTGCATTGAGGTGATAAACAAGGTCTGACTTGTGACCATTCAAGTGCTTTCTGCATGTGAATGTAACTGTTTCCTTAGATTCTTGTCAAATCTAACATCAAAGCTGTTCAGAACATTGTATTTATGTTGCCAAATGCATAATATCGGAGTTTCTTTCCTATAGAAAGGTTTATTCATTTTATCACCCTATACAAACCCATTTCTTTCTGAAGAGCTTTTAAGGTTCAATAAAGCACCATAAAAGTAAAAAAAAAAAAAAAACATCTGTTCATCACAGAAAGCTAATGTATGTCTTCAGAAGAAATATATAATTAATGCAAAAATTGTATGGACTACTTTCATGATGCTTTCGAGTCCCTCTTCTTTGTTATTGATCCTTCTTTGTAGAGATGAGAAAAAATGCATCCGTTAATGTACCACATGAGAAAGTCATGTGAGTTTGGAATTGTTATTTTATTATCTAATCTAATGCAAAGACATTTACAGATTTTAAAGTGTGATTGAGTGTCAATAGTTCTTGGGGCCAGAACACAAGATGAACCATTGATTTATCTGTATTTATAATTCATTGTAAATGTGCAGGCAATAAGAGCTGCCAGGTTTGTTTGCATGTGAAGCCACCAGCAAATCATTTTGAATCATAACCCACCTGTGAATGTCCTAATGCCAGATGCCAAATCACGAATGCCACGAAGTGTGGCGAGTCTGCATTAAAAACAACAGGGTTTCATGAATGTATTACGAGTTTTACATTTATTTATGTTGTAAGACAATGACAGCTCTGGCTGTGAATGGAGTCCCAGAGCTGTACACGCTAAGCTTGTATCAACAGATGGTCGTGGTGCTGCTTGTGTGTTTTTGATAAGAAATGTTTGCATATGCTTACAACTGTTTGACATGTCTGCTAACTGCTCTGATGTGCTTGCCTTGTAATGGTGCCTCTAAAGCGTATCATTATTTGATTCTGTGCTGCCTGTGTTTCCATTCACCGGGATGGACTGTGTTTCATGCCATTATCATAATTTAATCGGGAAGGGGGTTGGGGTATACCAAAGTGCTTCTGTAATAGTAAGCACCCCCACCCACATTTTGCACAATAGCCAGAAGTGGTTTGAAATGGTTGAAATATTTTCCATCAATTGTGCTGCTGAGGAACTATTTGAAATGACTGTTTTGATCGAGAACTTGTTCAAACCATTGTATTCATAATACATCTAGTATATAACCAGTCGCTGATTCATTGTTGTTATTTGACTAAAAGGGAAATGGCTTTGACATTTTATAATTTATCTATATATTAACATTGAAAAACGCTGTCCCTATTGATATATGGAAAAATTACAAAATAAAATAAAAAATAAAGAACACAACATGAGTGGCATAACTCATCAGAATTGATATTTGTGTCTTATCTGGGGCTGTTCACAGAGAACGTGTTTTTGCATTAAAAAGCAAAATGCCGCACAATAGTATACAACTGTGTACATAGTGCTGATGAATGGGAAAGAAGGCAGGGTTTCAAGATGTGTTTGTAAAAGTTTTCAAAATGCCGCTCTCACGCATAAGACGCTGAACAAGTGGTCTAAGAACCGGCCCTTATTCTCCTTGATTTGTTGCATTCATGACAGTTAATTTAAAAGGAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU562624 True 2472 lncRNA 0.36 1 7959672 7962143

Neighbor

gene id symbol gene type direction distance location
CI01000340_07954531_07957240 NA coding upstream 2364 7954531 ~ 7957308 (+)
CI01000340_07948302_07952600 NA coding upstream 6966 7947428 ~ 7952706 (+)
CI01000340_07929169_07934135 NA coding upstream 25253 7928482 ~ 7934419 (+)
CI01000340_07920331_07924545 NA coding upstream 35127 7920331 ~ 7924545 (+)
CI01000340_07794457_07834047 NA coding upstream 123946 7793768 ~ 7835726 (+)
CI01000340_08017397_08018781 NA coding downstream 55207 8017350 ~ 8019004 (+)
CI01000340_08024828_08028479 GTPBP6 coding downstream 62685 8024828 ~ 8028608 (+)
CI01000340_08076352_08117930 SLC9A7 coding downstream 114209 8076352 ~ 8119164 (+)
CI01000340_08127948_08139978 TUBGCP5 coding downstream 165805 8127948 ~ 8141062 (+)
CI01000340_08150345_08170718 CYFIP1 coding downstream 188202 8150345 ~ 8170846 (+)
G490455 NA non-coding upstream 88512 7859276 ~ 7871160 (+)
G490466 NA non-coding upstream 136643 7747670 ~ 7823029 (+)
G490482 NA non-coding upstream 216078 7743380 ~ 7743594 (+)
G490448 NA non-coding upstream 226861 7732018 ~ 7732811 (+)
G490502 NA non-coding downstream 86472 8048615 ~ 8048994 (+)
G490437 NA non-coding downstream 87744 8049887 ~ 8051962 (+)
G490503 NA non-coding downstream 89943 8052086 ~ 8053101 (+)
G490442 NA non-coding downstream 94042 8056185 ~ 8065521 (+)
G490471 NA non-coding downstream 223928 8186071 ~ 8186347 (+)
G489634 NA other upstream 1258884 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 3294487 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 3558176 4399419 ~ 4401496 (+)
G487133 NA other upstream 3977127 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 5027872 2930635 ~ 2933935 (+)
G490645 NA other downstream 1076669 9038812 ~ 9043101 (+)
G490826 NA other downstream 1163041 9125184 ~ 9131397 (+)
G490839 NA other downstream 1272830 9234973 ~ 9237559 (+)
G490896 NA other downstream 1869330 9831473 ~ 9845052 (+)
G492194 NA other downstream 2689540 10651683 ~ 10652694 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_032175 NA non-coding NC_007117.7 CM002890.2 37314337 ~ 37315909 (+)