G490733


Basic Information

Item Value
gene id G490733
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 8841438 ~ 8842135 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU562917
AGCTGTCTTGAACAAACTTGGAGCTGAGGCGGTTCTCTGGCTCCTCCACACCACTAGATGGGGTTACTTTGCAACTAGATGTGGGAGGCAATTCACTGGTGGTAGAGGAGAAGGACACATGGAACTGGGCAGGTAAAATAAAAGGTTTTCCAGTTGATTTTACAGAGGAAGTGCCAGTGCTATTAGACACGTTCTGAATGGGGGGTGAACGTTGTTTTTCAGGAAGAGGAGGTTGGGGTAAGGAGGCTGGGATGGTAATTGCTGTGTAGCCTGTGTATGGTACATGAGGCACTGTCAGAAGAGGGTAGCAGTATGATGCTATAGGGAATGAGGGTGTGACGTAGCCATCAGGGTCAGGGGACGATGTTGTCAGGTCACTGTTGCTGCTTTCCTCATTGCAGTCGGTCAAGGGTGTCACGCTTTGTCTTTCAGTATTTGTGTTAAATGAAGAGAATTCAGAAGTGGAGCTTCTCTCTGAAGAGCAAAGAGGTGGTTGAGGACTTGTTGAGGTTGATGTTGAGGTGTAGCATGAGCCGGGGCGCTCCCCTTTATCCTGCACTGATTCTGGGACACAGTTACTGAGAGGTCTGGGGTTGTGTGTTCGTACCTGCACTAACTCCACACCCTTGGATGATGGTGGGTTACTAATTACAGCGGTGTTAGATGTAGAATCTATTATGGATGTTTTCTTCATCTTT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU562917 True 698 lncRNA 0.48 1 8841438 8842135

Neighbor

gene id symbol gene type direction distance location
CI01000340_08774019_08777325 SLC48A1B, SLC48A1 coding upstream 63136 8773837 ~ 8778302 (+)
CI01000340_08763694_08772208 BIN2B coding upstream 68641 8762472 ~ 8772797 (+)
CI01000340_08746450_08751542 STK35L coding upstream 89840 8745319 ~ 8751598 (+)
CI01000340_08710260_08719614 UBE3A coding upstream 121431 8710260 ~ 8720007 (+)
CI01000340_08632493_08682360 ATP10A coding upstream 159033 8632373 ~ 8682405 (+)
CI01000340_08882602_08883850 PRSS60.1, PRSS60.2 coding downstream 40467 8882602 ~ 8883850 (+)
CI01000340_08895637_08897909 PRSS60.2 coding downstream 53235 8895370 ~ 8898290 (+)
CI01000340_08905333_08906557 GPR84 coding downstream 63198 8905333 ~ 8908001 (+)
CI01000340_08938200_08942073 NA coding downstream 96017 8938152 ~ 8942624 (+)
CI01000340_08970483_08982079 B4GN1, B4GALNT1B, B4GALNT1 coding downstream 128307 8970442 ~ 8983411 (+)
G490641 NA non-coding upstream 35028 8803715 ~ 8806410 (+)
G490725 NA non-coding upstream 38022 8803083 ~ 8803416 (+)
G490724 NA non-coding upstream 41906 8799124 ~ 8799532 (+)
G490721 NA non-coding upstream 47544 8793410 ~ 8793894 (+)
G490720 NA non-coding upstream 48215 8792971 ~ 8793223 (+)
G490735 NA non-coding downstream 10395 8852530 ~ 8852749 (+)
G490736 NA non-coding downstream 11148 8853283 ~ 8853559 (+)
G490737 NA non-coding downstream 11474 8853609 ~ 8853819 (+)
G490741 NA non-coding downstream 15695 8857830 ~ 8858040 (+)
G490742 NA non-coding downstream 16874 8859009 ~ 8859242 (+)
G489634 NA other upstream 2140650 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 4176253 4659584 ~ 4669322 (+)
CI01000340_04399692_04401164 NA other upstream 4439942 4399419 ~ 4401496 (+)
G487133 NA other upstream 4858893 3973915 ~ 3982545 (+)
CI01000340_02930635_02933799 LSM2 other upstream 5909638 2930635 ~ 2933935 (+)
G490645 NA other downstream 196677 9038812 ~ 9043101 (+)
G490826 NA other downstream 283049 9125184 ~ 9131397 (+)
G490839 NA other downstream 392838 9234973 ~ 9237559 (+)
G490896 NA other downstream 989338 9831473 ~ 9845052 (+)
G492194 NA other downstream 1809548 10651683 ~ 10652694 (+)

Expression


Co-expression Network