G491660


Basic Information

Item Value
gene id G491660
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9133163 ~ 9138105 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU563988
AGGCCTAAGAACTCTCTTTGCTTCTTGCAGAACTTTCGGCGTATCTTTGACTGAACACAGAACCAGTGTGCACACCACAACATCCACCGAGTTGTCCTCCACCGCCTGTAGATTCTCCCCCGACGCCACTACGAAGCTGTCATATACGAGGTGGTCGTTCTTCGCCATACTTTTCTCCAGGTAGTTTTTGAAATGCGGGTTGGGGTCGATGCATGTGATCTTGCAGCCCGTCGGGTAGTGCTCGAAGTTCGCCCCGGATCCGCAGCCCACCTCCAAGATGCGCAGAGAGCCTTTCGGGGGGTAGAATTTAGCCAGGTTTCGAAACAGTTCCCGTTTCTTGTCGTTCATTTTGTCATTGTATGAAAACGTTATTTTATAGACTATTAGAGGAAACACGCGTTTGTATAAAGACAAAAGTCCAACCAGCTCTGCGACATGCAGCGGTAAAGTGAGGACTTTGAATAAAAATGCGCAAGCGTTCATAAACAGCGTCATTTTTAGCAGCAAACCTACATTACATTTGACAGACAAGAGGGAAGTAGCTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU563988 True 545 lncRNA 0.48 2 9133163 9138105

Neighbor

gene id symbol gene type direction distance location
CI01000340_09075161_09125493 SCN8AB coding downstream 7001 9075068 ~ 9126162 (-)
CI01000340_09039154_09043792 NA coding downstream 87524 9038823 ~ 9045639 (-)
CI01000340_09015910_09020996 KRT4 coding downstream 111825 9014968 ~ 9021338 (-)
CI01000340_08986297_08992859 NA coding downstream 140304 8985772 ~ 8992859 (-)
CI01000340_08950990_08963235 OS9 coding downstream 169285 8949564 ~ 8963878 (-)
CI01000340_09141937_09145844 ATF1 coding upstream 2880 9140985 ~ 9146281 (-)
CI01000340_09150825_09173139 DIP2BB, DIP2B, DIP2BA coding upstream 12189 9150294 ~ 9173139 (-)
CI01000340_09186493_09193971 ATF7B coding upstream 47592 9185697 ~ 9194027 (-)
CI01000340_09207912_09220198 NA coding upstream 69807 9207912 ~ 9220198 (-)
CI01000340_09221348_09234885 ESPL1 coding upstream 82826 9220931 ~ 9234885 (-)
G491764 NA non-coding downstream 95550 9037351 ~ 9037613 (-)
G491726 NA non-coding downstream 248900 8883828 ~ 8884263 (-)
G491725 NA non-coding downstream 249768 8882593 ~ 8883395 (-)
G491724 NA non-coding downstream 252499 8880393 ~ 8880664 (-)
G491658 NA non-coding downstream 326476 8803715 ~ 8806687 (-)
G491831 NA non-coding upstream 323281 9461386 ~ 9461638 (-)
G491869 NA non-coding upstream 421210 9559315 ~ 9559524 (-)
G491882 NA non-coding upstream 446756 9584861 ~ 9699676 (-)
G491933 NA non-coding upstream 459526 9597631 ~ 9598101 (-)
G491875 NA non-coding upstream 467872 9605977 ~ 9607644 (-)
G491712 NA other downstream 333586 8799201 ~ 8799577 (-)
G489511 NA other downstream 2805791 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 2912521 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 3808019 5320753 ~ 5330215 (-)
CI01000340_04598932_04627160 NA other downstream 4474102 4598714 ~ 4627447 (-)
CI01000340_10025958_10028902 SRSF3 other upstream 883787 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA other upstream 1219079 10356758 ~ 10359856 (-)
G493109 NA other upstream 2535641 11673746 ~ 11677994 (-)
G493266 NA other upstream 2929072 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 3474111 12577435 ~ 12625758 (-)

Expression


Co-expression Network