Gene
RNA
| Item | Value |
|---|---|
| gene id | G491001 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 9520154 ~ 9520955 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU563237 | True | 566 | lncRNA | 0.37 | 3 | 9520154 | 9520955 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_09364385_09394079 | ITPR1A | coding | upstream | 125629 | 9364385 ~ 9394525 (+) |
| CI01000340_09339973_09344291 | ENDOU | coding | upstream | 175761 | 9339911 ~ 9344393 (+) |
| CI01000340_09305181_09322207 | SMARCC2 | coding | upstream | 197764 | 9305181 ~ 9322390 (+) |
| CI01000340_09293326_09302243 | C1QL4, C1QL4B | coding | upstream | 217739 | 9293184 ~ 9302415 (+) |
| CI01000340_09137611_09140263 | NA | coding | upstream | 379891 | 9136710 ~ 9140263 (+) |
| CI01000340_09589824_09608037 | SLC4A10, SLC4A8 | coding | downstream | 68869 | 9589824 ~ 9608605 (+) |
| CI01000340_09611318_09614740 | NA | coding | downstream | 90363 | 9611318 ~ 9614740 (+) |
| CI01000340_09630528_09631067 | NA | coding | downstream | 109573 | 9630528 ~ 9631363 (+) |
| CI01000340_09645797_09647452 | NA | coding | downstream | 124842 | 9645797 ~ 9647551 (+) |
| CI01000340_09649643_09655912 | NA | coding | downstream | 128688 | 9649643 ~ 9655912 (+) |
| G490858 | NA | non-coding | upstream | 87390 | 9427520 ~ 9432764 (+) |
| G490966 | NA | non-coding | upstream | 92951 | 9425372 ~ 9427203 (+) |
| G490904 | NA | non-coding | upstream | 102512 | 9416885 ~ 9417642 (+) |
| G490963 | NA | non-coding | upstream | 110179 | 9409719 ~ 9409975 (+) |
| G490932 | NA | non-coding | upstream | 112232 | 9407668 ~ 9407922 (+) |
| G491000 | NA | non-coding | downstream | 578 | 9521533 ~ 9522555 (+) |
| G490933 | NA | non-coding | downstream | 47064 | 9568019 ~ 9569837 (+) |
| G491020 | NA | non-coding | downstream | 49636 | 9570591 ~ 9573270 (+) |
| G491021 | NA | non-coding | downstream | 53295 | 9574250 ~ 9574482 (+) |
| G491022 | NA | non-coding | downstream | 53776 | 9574731 ~ 9574968 (+) |
| G490839 | NA | other | upstream | 282595 | 9234973 ~ 9237559 (+) |
| G490826 | NA | other | upstream | 388757 | 9125184 ~ 9131397 (+) |
| G490645 | NA | other | upstream | 477053 | 9038812 ~ 9043101 (+) |
| G489634 | NA | other | upstream | 2819366 | 6694221 ~ 6700788 (+) |
| CI01000340_04660938_04668996 | NA | other | upstream | 4854969 | 4659584 ~ 4669322 (+) |
| G490896 | NA | other | downstream | 310518 | 9831473 ~ 9845052 (+) |
| G492194 | NA | other | downstream | 1130728 | 10651683 ~ 10652694 (+) |
| CI01000340_10781781_10785861 | CAMKVA, CAMKVB, CAMKV | other | downstream | 1262447 | 10781468 ~ 10787792 (+) |
| G492847 | NA | other | downstream | 2088151 | 11609106 ~ 11696961 (+) |
| G493617 | NA | other | downstream | 3534437 | 13055392 ~ 13069652 (+) |
