G490933


Basic Information

Item Value
gene id G490933
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 9568019 ~ 9569837 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU563139
TAAAAATGCAATGTCTCTGAATTGCAGTTCAATGTAAACATTATAAAAGTTCTTCATCAATGGGTAAAAATAATTAAATAAAAAATTATATAATTCATATAGAAAATAAGAACAGAGACAGGTGAAAGCATAAGTTCTCAAAAAAAATTAAGGAATAAAAAAAAATCAATTAAACAAAAATAATAATATTTGTGATTTTCAAGTGCTTTTTATTGTAGAGGTTCATCAGGATGATCAAGTTTATGCAAAAATGTCCCAAAAACCCATTCTTTTTGTTGACATTATGACATGCAAAATGGTATTAATCGCATATTATAACAAATGTATCCATAATAATGGATTTAGCATGCAATTCATATGATACTACTTTATGATAAGCACTGACAAAAATGAGAAAGATTAAAAGAATGAATGCTAGCTCCATCTAGTGGTGAGTTTGGTTAACGGTTAAAGGCATGAGTTATATAAAACATCTACTAAGCTAACTTCAAATTGCAAAAATTTGAAAACTAGTGTTTCCAATAATTAACATTGTCAACAATCAGCTCATATGGAAACATCCTGACATCTAGAATACAAAATTCAGCACCATAGATTAATACTACAGTCAGTACACCACAGTTGACAGTGACCATGCTAATAATCATCAAACATAGCACCAGTGAAAGGTTGCCCATATCAATATAATACAGAATTAGGCACTCCATAATAGTACTACTGTATATCTCACATTGAATTTAATTAATTTATGTTAAAAAATGTTTCTTTATCCATAAAAGTGTCAAAAATTAAAAGCTGTTGCATGGTTTCAGAAGATTTGAAGTAGAGAGCACAAGTCAAATATGCTATGTGGTGCTTTTTGGTCCTTTTTGAACCTTGGTGTATGCCTCCATTATATGGAAGAGACCAGATCAGCCAATTTTATGCATAAGATCTCCTTTTGTGTTCCACAGGAAGAATCTTCAGTTTTGGATACGCATTAGGATATAAGAGTAAATAATGACAGATTTTTTTTTTTAAGTGCTCTTAATCAGTAAAAAGGTGCTTCCTCAACTAATATGCTGTTCTCCTTCTTATTTCTGAAGGCAGATTGATAAGGTATATGGGTTTTGAATCCAGTGTATTTAAAGATAAACTCACAATACAATTGATGCAGTCTAAAACATATTCATTCCATTTAGGTTAGAATCTGTTTGAATGAAATCATGTTCTCCAAAAGGTTCCTCAGGATGACTTCGGCCCTTCTCTCTTTGTAAAAGTGTCCGTGGTCCGTCTATGGTTTAGTGAAAGGTGCTGCTGCATGGGTAGGACTGGATAAGATATATTGACTGTGTGTATGTCGTGTTTGTAGCGACAGGAGGTGAGAGTTTGTCTAGGTCGTATGCTGATCACGTCCAGTGAGGGGGTTGGGCGGTAAAGAGATGGAAGGTTGCTGCGTTTCCTGTGTGTGTGAGGGTGATCGGGCTGGGCTAGAGTGGGTGAGAGCTTTTGTGGATGAAGTTCTGCTGGGTTGGGAAGAACACAACAGTTTGAAGGTAAGACTAGTCTGTGGGGACGTTTCCTCAGTTTAGGGTAAAAGGTTGAAGATTGCTCAAACGTGACTTTACGGGAAGGGAGGGTAGGCCAAGCCTTTTTTATCTTTTCTGATTGATTCTCCTTGCCAGAAGTGCAATGGCTGCTTATAAGTGAAGGCTTGTGATTGGTGGATTTTGATAGCGGCTCAGGGTGAGACTGAATGAGAGGCTTGTAAATAGGGGCACGGGGACGTCTGATTGAAGTCCCCTCTATGAGAAGATTCACTCCCACATACTGAGGAACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU563139 True 1819 lncRNA 0.36 1 9568019 9569837

Neighbor

gene id symbol gene type direction distance location
CI01000340_09364385_09394079 ITPR1A coding upstream 173494 9364385 ~ 9394525 (+)
CI01000340_09339973_09344291 ENDOU coding upstream 223626 9339911 ~ 9344393 (+)
CI01000340_09305181_09322207 SMARCC2 coding upstream 245629 9305181 ~ 9322390 (+)
CI01000340_09293326_09302243 C1QL4, C1QL4B coding upstream 265604 9293184 ~ 9302415 (+)
CI01000340_09137611_09140263 NA coding upstream 427756 9136710 ~ 9140263 (+)
CI01000340_09589824_09608037 SLC4A10, SLC4A8 coding downstream 19987 9589824 ~ 9608605 (+)
CI01000340_09611318_09614740 NA coding downstream 41481 9611318 ~ 9614740 (+)
CI01000340_09630528_09631067 NA coding downstream 60691 9630528 ~ 9631363 (+)
CI01000340_09645797_09647452 NA coding downstream 75960 9645797 ~ 9647551 (+)
CI01000340_09649643_09655912 NA coding downstream 79806 9649643 ~ 9655912 (+)
G491000 NA non-coding upstream 45464 9521533 ~ 9522555 (+)
G491001 NA non-coding upstream 47064 9520154 ~ 9520955 (+)
G490858 NA non-coding upstream 135255 9427520 ~ 9432764 (+)
G490966 NA non-coding upstream 140816 9425372 ~ 9427203 (+)
G490904 NA non-coding upstream 150377 9416885 ~ 9417642 (+)
G491020 NA non-coding downstream 754 9570591 ~ 9573270 (+)
G491021 NA non-coding downstream 4413 9574250 ~ 9574482 (+)
G491022 NA non-coding downstream 4894 9574731 ~ 9574968 (+)
G491023 NA non-coding downstream 6235 9576072 ~ 9576282 (+)
G491031 NA non-coding downstream 50403 9620240 ~ 9623041 (+)
G490839 NA other upstream 330460 9234973 ~ 9237559 (+)
G490826 NA other upstream 436622 9125184 ~ 9131397 (+)
G490645 NA other upstream 524918 9038812 ~ 9043101 (+)
G489634 NA other upstream 2867231 6694221 ~ 6700788 (+)
CI01000340_04660938_04668996 NA other upstream 4902834 4659584 ~ 4669322 (+)
G490896 NA other downstream 261636 9831473 ~ 9845052 (+)
G492194 NA other downstream 1081846 10651683 ~ 10652694 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other downstream 1213565 10781468 ~ 10787792 (+)
G492847 NA other downstream 2039269 11609106 ~ 11696961 (+)
G493617 NA other downstream 3485555 13055392 ~ 13069652 (+)

Expression


Co-expression Network