Gene
RNA
| Item | Value |
|---|---|
| gene id | G491875 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 9605977 ~ 9607644 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU564221 | True | 773 | lncRNA | 0.41 | 3 | 9605977 | 9607644 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_09569243_09577176 | TTLL3 | coding | downstream | 28801 | 9568227 ~ 9577176 (-) |
| CI01000340_09499658_09526119 | COL7A1 | coding | downstream | 79858 | 9499257 ~ 9526119 (-) |
| CI01000340_09489742_09491331 | NA | coding | downstream | 114437 | 9487214 ~ 9491540 (-) |
| CI01000340_09439272_09443734 | IP6K2B, IP6K2 | coding | downstream | 162243 | 9438381 ~ 9443734 (-) |
| CI01000340_09428701_09432767 | SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1 | coding | downstream | 173210 | 9427666 ~ 9432767 (-) |
| CI01000340_09621058_09623347 | NA | coding | upstream | 13371 | 9621015 ~ 9623366 (-) |
| CI01000340_09623654_09628766 | CCDC174 | coding | upstream | 15876 | 9623520 ~ 9628766 (-) |
| CI01000340_09632037_09635287 | TATDN2 | coding | upstream | 23831 | 9631475 ~ 9635580 (-) |
| CI01000340_09637047_09638688 | VHL | coding | upstream | 29050 | 9636694 ~ 9638688 (-) |
| CI01000340_09640461_09646025 | CRBN | coding | upstream | 32172 | 9639816 ~ 9646025 (-) |
| G491933 | NA | non-coding | downstream | 7876 | 9597631 ~ 9598101 (-) |
| G491869 | NA | non-coding | downstream | 46453 | 9559315 ~ 9559524 (-) |
| G491831 | NA | non-coding | downstream | 144339 | 9461386 ~ 9461638 (-) |
| G491660 | NA | non-coding | downstream | 467872 | 9133163 ~ 9138105 (-) |
| G491764 | NA | non-coding | downstream | 568364 | 9037351 ~ 9037613 (-) |
| G491938 | NA | non-coding | upstream | 17240 | 9624884 ~ 9625228 (-) |
| G491946 | NA | non-coding | upstream | 83964 | 9691608 ~ 9693371 (-) |
| G491970 | NA | non-coding | upstream | 157791 | 9765435 ~ 9766574 (-) |
| G491978 | NA | non-coding | upstream | 247262 | 9854906 ~ 9855304 (-) |
| G491980 | NA | non-coding | upstream | 250627 | 9858271 ~ 9858545 (-) |
| G491712 | NA | other | downstream | 806400 | 8799201 ~ 8799577 (-) |
| G489511 | NA | other | downstream | 3278605 | 6320457 ~ 6327372 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | downstream | 3385335 | 6095704 ~ 6194501 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | downstream | 4280833 | 5320753 ~ 5330215 (-) |
| CI01000340_04598932_04627160 | NA | other | downstream | 4946916 | 4598714 ~ 4627447 (-) |
| CI01000340_10025958_10028902 | SRSF3 | other | upstream | 414248 | 10025656 ~ 10029589 (-) |
| CI01000340_10357202_10357606 | NA | other | upstream | 749540 | 10356758 ~ 10359856 (-) |
| G493109 | NA | other | upstream | 2066102 | 11673746 ~ 11677994 (-) |
| G493266 | NA | other | upstream | 2459533 | 12067177 ~ 12116900 (-) |
| CI01000340_12577571_12625562 | PTPRG, PTPRGA, CA16B | other | upstream | 3004572 | 12577435 ~ 12625758 (-) |
