Gene
RNA
| Item | Value |
|---|---|
| gene id | G491946 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 9691608 ~ 9693371 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU564303 | True | 1031 | lncRNA | 0.45 | 5 | 9691608 | 9693371 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_09640461_09646025 | CRBN | coding | downstream | 45583 | 9639816 ~ 9646025 (-) |
| CI01000340_09637047_09638688 | VHL | coding | downstream | 52920 | 9636694 ~ 9638688 (-) |
| CI01000340_09632037_09635287 | TATDN2 | coding | downstream | 56028 | 9631475 ~ 9635580 (-) |
| CI01000340_09623654_09628766 | CCDC174 | coding | downstream | 62842 | 9623520 ~ 9628766 (-) |
| CI01000340_09621058_09623347 | NA | coding | downstream | 68242 | 9621015 ~ 9623366 (-) |
| CI01000340_09702982_09703952 | TSPO | coding | upstream | 9598 | 9702969 ~ 9704760 (-) |
| CI01000340_09744311_09747075 | PPIL1 | coding | upstream | 50201 | 9743572 ~ 9747307 (-) |
| CI01000340_09772435_09775402 | NA | coding | upstream | 78867 | 9772238 ~ 9775402 (-) |
| CI01000340_09779573_09780250 | NA | coding | upstream | 85908 | 9779279 ~ 9782052 (-) |
| CI01000340_09785598_09788215 | NA | coding | upstream | 92179 | 9785550 ~ 9788301 (-) |
| G491938 | NA | non-coding | downstream | 66380 | 9624884 ~ 9625228 (-) |
| G491875 | NA | non-coding | downstream | 83964 | 9605977 ~ 9607644 (-) |
| G491933 | NA | non-coding | downstream | 93507 | 9597631 ~ 9598101 (-) |
| G491869 | NA | non-coding | downstream | 132084 | 9559315 ~ 9559524 (-) |
| G491831 | NA | non-coding | downstream | 229970 | 9461386 ~ 9461638 (-) |
| G491970 | NA | non-coding | upstream | 72064 | 9765435 ~ 9766574 (-) |
| G491978 | NA | non-coding | upstream | 161535 | 9854906 ~ 9855304 (-) |
| G491980 | NA | non-coding | upstream | 164900 | 9858271 ~ 9858545 (-) |
| G491983 | NA | non-coding | upstream | 173678 | 9867049 ~ 9867353 (-) |
| CI01000340_09898618_09904814 | RFT1 | non-coding | upstream | 202391 | 9898618 ~ 9904814 (-) |
| G491712 | NA | other | downstream | 892031 | 8799201 ~ 8799577 (-) |
| G489511 | NA | other | downstream | 3364236 | 6320457 ~ 6327372 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | downstream | 3470966 | 6095704 ~ 6194501 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | downstream | 4366464 | 5320753 ~ 5330215 (-) |
| CI01000340_04598932_04627160 | NA | other | downstream | 5032547 | 4598714 ~ 4627447 (-) |
| CI01000340_10025958_10028902 | SRSF3 | other | upstream | 328521 | 10025656 ~ 10029589 (-) |
| CI01000340_10357202_10357606 | NA | other | upstream | 663813 | 10356758 ~ 10359856 (-) |
| G493109 | NA | other | upstream | 1980375 | 11673746 ~ 11677994 (-) |
| G493266 | NA | other | upstream | 2373806 | 12067177 ~ 12116900 (-) |
| CI01000340_12577571_12625562 | PTPRG, PTPRGA, CA16B | other | upstream | 2918845 | 12577435 ~ 12625758 (-) |
