G490880


Basic Information

Item Value
gene id G490880
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10008303 ~ 10020235 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU563086
TCACTGTGCAGATTGTCCTCGATCTCAGAGACGTTTGGTTTATGATCTCCATCTTCTAATTCATTCCTACTGTCAGAAGCGTCCAGCCTACCAAGGCCTTGTTTGCCCTTATTAGTGCGTCTGGACCCAAACTTCCTTTTAGTTGAAGGCGACGTCTTTTCTTGGACAACAGGGTTGCCACTTTCTTCGAGCTGACTGCCACTTGTGTGTGCACTGGGGACATCAAGATACTCTTTATTTAGCTTATTTTCAGGGATATTATGCACTACAGACACCTCAACTCTTTCAAGGTCCTTGATTTCTTGCTTATTTGTCTCTAAGTTCTTTTCTATCTCCCCATCCTCCTTATCTTCATCCTCCCTTTCTGCTTTGATCTGCTGTCTGGGATTCTTGCGAGTTGAACCCATTTTTCTTCTTCGTCTTTCTGGTGAGTTGGGTTCACTGTGAGTTTTGGAGCTCTGTGATGGTTTTAGCTGAGATTTGATTTCTGAGTTTTCTAGCTTATTGAGATCAGGAATATTCGCTAAGTCACCTGAGTTTGGCTGATTGACAAACAATTCATAATTCAATGAACTTTGAGAAGTCTTATTTAAAGCTCTCTCTATCTCACTAAGAAGTGAATCCTCTGACTGATTAGAGTAATCGTGAATTGTTTGTTCTCCCACAGCTTTTCCTACTAAGCTCATTTCAGAGTCCTGAGACATCTGTAAATGTGTGTCTGCAGTTTCCGTGTCCTCGTATGCATCTCTCTTCCCCCGTATTCTTCCTTCTCTGAGATTCTTCCGAGTCGAGCCCATCTTCCTTCTTTTCTCAATTGTAACAGTCTCTGGCTGTAGATGTTTGGTAACATCAACATTTACTAACTGATTTTCACATATTTGAAGAGTATTTTCAGGTGTTTCATGTGCAGTTGGTTCACTGGGGTCAGAATTATTCTGATAATCATTTTCAACTCCTTTTAAATCAGTTGCACCAACTAACATTTCAGATTCAAGATCTGTGGTGCTGACAGCTTCTGAGGACATCTCCTTGAGCTGACTAATGCTTGATGCTAAAGGCATATCATCTAAATCATCCTCTGCTTTTTTAGTTTCTCTATCCATTGCCATATCAAGTATATCGTTCTGGTCACCCATGTTTTCCCCACGCATTTCTCGAGGTTTTCTTCGGGTGGAGCCCATCTTTCGCCTCTTTTCATGTGTGGAAGGTATTTTTTGAGAGCTGTTTTCATGAACAACATCATCTTGAGTGATTTTTAGTTCTTGTGTGGGAATAGGATGGCACATGGTTTCAGTTTGTTCAGGCTCTGATGCTCCATGAACATTTTGATCAAGGTAATCTGCAGACATGCTCTGATGAACATCTTCGCGACTGACTGTCAAGACAAATTTGTCCGTTGTCCCCTCATAGAGATTGATTGCCTCATTCAGACTATTACTGTCATTTTCAGTATTCTCTATGCCCTTTTCTTCACTCACATCAGATGGGTCATGGATATTGAGAGAAACTTCCTTCACTCCATCTTCTGATTCAGAAAACATGTTCGAAATAGCTGCTTGATGAGAAAATTCAACAGGGAAGGTTTGTTCAGTGTCTTCATCCAATTTATTTTCTCCTTCACTGGTTGCTAAATGTGGGTCTGTATCCTGCTCCTTTGCCATTCCTTTACTCTCTCCATCCATCTCTTTGGATTCTACTTCTCTTCTCTGCCCTTTGTTCCCTCTGAATGTCTTGCGTGTTGACCCCATTTTTCGCTTTTGAACAACTGGAATCGAGTTTGATTGTACATCTTTTCTGTGAGACTCTTCAGTAATGATGCTTAAGATTTCTCTTTGTTCAGGAACTGAGTATGTCTCAGCATCTCCCAAAGGAAGGTCTGAAGCCATCTCAGCAGCTTGTTTTTGATCACTTTCTTCTGAGTTTTCTGTCTGCACATCTGATTTACTAGCCACTTCCTGAATGTCAAAGCCTTCTTTACCAGCAGATGAACTAAACGCTTGCTGATGTACAGGAGATCCTGTAATGGCTTCTTCAAGAGTTAATTTCTCCTCAGACTTTGTGGTCCCATCATCAATTGTTGTATTTTCAGCTTCTCCCTCTTTCTCTTCTTCAACCTCCTCTTCATTTACCATCCTCTTCCCTCTCTTCCGAGTTGACCCCATTTTTCTCTTCTGCAAAGATCTGTTGGAGACTGAATGCATTTCAACTACCTCTGTTGGAGGTACAGAAGTGTCACCCATGACAACATCCTCAGATGACACATGAATTTGAGTTTCCTCCATAAGCAGGGCATCAGACAAGACAAGATCAGAATGACTTGTAAGGCTGTCTCTAACAAAATCTGCAGTTCTCTCTGGGACATCTAATAAATGTGAGCCAGTATCATCTTGTGATGGACCAGTTTGTGTTTGAGATACATCTGATCTTTGCTCTTGTTCTAAATCATCACATAGCTGCACTGACATATCCACTGGCTTTGTGGTCATTCTCTCCTCATCTTCATTGTCTCTTATATTCATAATTTCTTGTGTCACATTGTGATCAACCACGTTATCCTGGTCTTGAATTTCTGAGAGTGTTTCTGTGTCTTCTTCTCCTGACACTTCTACTCTCACTTTTCTTTGTCCTTTGTTCCCACTGAGAGGTCTTCGAGTTGAGCCCATTTTTCGCTTGTGAACAACTGGAGTCGATTTTGAGTGTGCCTCCTCTCTGAGAGTATCTTCAGGAATTATATTGATGTCACTTGGCTCAGTAATTGTGTCTGTTTCTCCTGAAGCTTTTTTCTCAACATTTTTAGAGACTTCAAATTCTTCCACGTGTGCATCATGGGAAGAAGCTTTTTGATGAAAATCAGACTCAGTAGTCATATCACTATATCCTTTAGTAGTGTCATCTTGCACAAGAAGACCAGTATGAGTCACAGAAGAAACATTCTCAGTATTTTCAGATAATTTCAATGCTTCCAGTTTTACACCAGTGAGCTTTTGAGCATCTTTTGAGCTTTGTGATGTAGATTTATCCTCCAAACTGAATGTTTCTTTCTCTACATTAATTATATTTTCACTATTAAATGTCTCATTTTCATCATGATATTCTCTATCTTTTCTTTGCCTTGTATCTCCTCTGAGAGGTCTTCTAGTTGAGCCCATTTTTCTCTTATGAACAACTGGACTCAATTTTGCATGTACCTCCTCTCTGTGAGAACCTGCAGGAACAGTGCTGTTGTCACTTGGCTTGGTACTTGTGTCTGTTTCTCCTGAAACTTTATTCTCAACATTTTCAGATACTTTCAATTCTTCCACGTGTGCATCAGAGACATTTTGATGAAAATCAGACTCAGTAGTCATATTACTCTCCACTGTAACTGTATGTCCAATAACTTCATCTTCTTTCATTAAAACAGTAGCTTCACAGATGTTTTCTTCTGTTCTTTCTGCTTCAGATGTTAAGTCGCTCATTTTGTTTTCTGTTTGAATTTCTGAGTGTGATTCTGTGTCTCCCTCTGCTGGCACTCTTTCAGCATCTCCAGTATCTTCCTGGGACTCTTCATTGATTTTTGTGAGGGTTTGTGATTCTGTGATGTGACAGACAGTTACTGCAGTGGATTCCTCAGACACTAAATCTAAACTAAATGATGACTGCATGAGATCAGATTCAGACCCTTCAGCAGGACCAACATCATTCTTCTCACATATTTCCACTTCCTGTTCTTTAGCTCCATCTTTTGAGATTTGTAACGAAGATTCATCTGGACTGGGTTCATCATCCAAACTAAATGTTTCTTTCTCTACATTGATCATAGCTTCACTGTCAAGTGTCTCATTTTCATCATGATATTTTCTTTCCTTTCCTTTATTGCCTTTAAGAGGTCTTCGAGTTGAGCCCATTTTTCGCTTGTGAACAATTGGAGTCGATTTTGAGTGTGCCTCCTCTCTGAGAGAATCTTCAGGAATGATGTTGATGTCACTCAAAACCTCATTCTCAGGATTTTCAGATACTTTCAGTGCGTCAGAAGAAGTTTGAAGAAAATCTGATTCAGTAGTCCTGTTACTCTCCACTGTTACTGTATCTACATTAACGTCATATTCTCTAACTAAAACACTAACATCATGGATGTTCTCTTCTGTTCCTACAGATTCACTGGTTGATGAGTAAAAATCTTTGTTCTGTGTTTGAATTTGTAAGTCTTTGTCTCCCCCTACTGGCACTATTTCATCATCTCCTTCATTTCCCTGGGTTTCTGAATGAAAGGTTGTGAGCTTGTAAGAATCTTGAGAATCTTCAGGAACAACAGAGCTGATATAACTTTCCTCAGCAATGGTGTCTGTCTCTTCTGAACCTACAGCTACGTGCAAAAGGAGACTGGAATCAATCACAGTAGAAACGTTATCAGATACTTGAAATGCTTCCAGGTTTGTATCAGGGGAAGTAGAATTTTGCTCTTCTGTTAATACTCTGTTTTGCTCTGGATTTTCTGTTTGAAAATCTGATTCGCTATCATTACATGCTGTGTTAGCATTGGTTAGAGGTTTTTCCACATCTAATATCAGGACTGTTGCATCCATCCCCTCAATTCCTTCAGTTTCTTCACCTCTTCCAACACTTCTGTCAAAAGCCATATTCTCTGACTCTGCACTGAAAAATATTCCTTCCTTTTCACGTTCCTCATACCCACTTTCACTTAAATCATAACCTTCTTTTTCAGGAGATTGCATAAACTGTTGTTGGTGTGCATGAGATCCTGTCTCTGTTGCTGAGTCTTCAAAACTAAGCATTTCCTCTGACTTTGAGGTCACATCATTAATTACAGTATTCTCAGTCTCTCCTTTGTCTTCTCTAGCCTCCTTATTTTCTAGCATCTTCCCAGCATTATCTTGTGACGGAACACTTTGTGTTTGAGATATAGTTGATGAATATTCTTGTTCTCTATGTAACTCCTCTTTTTCAGTTGAAACTTCACACGGTTCCTGATGTGAAATCCATACTGTCTCAGTGCTCGTTCCTCCGTCTTCTTTATTATCTCTTACTTCCATTATTATTTGTGTTACTTTGTGATCTCTTGCATCACCCTGGTCTGTCATTTCAAATCCATTGTCTGTTTCAGATCCTCTTTCATCTTCATCAACACACTCTAAATCAGTCAGAGTATCACATGTTATTGAATCAACATCACAAACATTATTTTCATGTTTCTTTTCCATATAAATCTCTTGGCTTTCTTTAACAGCATCACTCATCTCATGTGGTGAACTGGTTTCTGTGGGTTCAGCATGGCTAATGTTAGACGCAGGCACAACAAAACCTCGATTTCCTCCCTCTTTAATTTGAGCAGTTGAACAATCAAAGTTATCATGTTGGCTTAGTGATGCCTCAGAATTTAACACAAGTTCCTCTAATTGTGCATCCTGTCTTGGTGATAAACTACTCGTTTTATTATTTCTAGATGGTTCCTCTTTCTGCTTTAGAACCTCCTCCTTGGCTTCTACTGTGTTTACATCTCTGCAGTTGTGAGATGTGTTTGTATCTTTTCTTGTATCTGGCACATGTTGGTTGTTATCACTAAAATGACTTCCTGCTTCTTCCAAAACTTTGTTTAGAACATCAAAATCCTCAGTGTATGAACCAAACTTAAAATCCAATCCCTTGTTGAGTAATGGAGTACCATGGTGGCTAGATGTTTCAGGTAGGGGCTTTTCTGGATCAACAAGGGGAAAAGCAACTGATTGATTCATAGTTTCAGTTCCAGCTGAAACATCAAGCTCTTTTAGCTCAGCCAATAGAGACAGATTTGAAACCAAAGATGATTCTGTGTGGGACGATGGATCATCTCTTGCCACACCATCCCACATTTGCGCCATCTCTTCTGACGTGCTGAACTTTCCTTCATCTATGACTTCTGCTTTTCTTTCATTCTCTGTCATGCTTCTCAAATCTTCTTGCACACCTATATTTTCTCTGTTTTTCCCTCTGAGAGGCCTGCGGGTTGATCCCATCCTTCTTTTTTGTCCAGAGGTGCTGGCTAATGGGGTTTCTTGGCGACTCAATGCATTTAGTTCATTAAACATGACTGAATCCTCCCTCAACAAATCACTTTCAGCTACTGTAGCAGCACTAAAATGGACAGATCCCCCCACTGTCTTGTCTATAGGCGTATCATTTACTACCTCATAAGAATGAGAGGTTATTTCTTGATGGCGTATTGCATCTTTTTCTTCATTTTCCGGAACCACAACCATAAAAGTTGCTTGAGGCTCCCCTCCCAACCCAGAACTTTCAGTCTGAAGGGATAAACTAGAAGGAAAACTTGATGACCTTGATTGTTCATCTTCTGTGAGAGATGAATGTTGTTCTTCAGTGGCTGATGTGTTTGGTTGAGTTAAATATTCATCTAACTCTTCAGTGCTCCTCACCTCAAGCTTTCGCTCAACTTTAAACCCACCAGGACTCTTGCGAGTTGATCCCATTTTTCTTTTCCGTTCTGGAAGTTCAGTCTCCATGAGTGAATCCTTGTGACTGCTTGCATGTGGAGGACATTCTAACACAGAGGTTTGTTGACCTGGTGGATGATCAAATTGGGCTGAATGGTAATCAGTGGTGGTGTGAAATTCATTTTGCCCATCACCACTCTCTGCAATCTGCTGAAGCCCATCATCATCATCATCTTTATCTTGCTCAAAATTTTTAAGACCTTTAGGACCTCGTCGAGATGAACCAAGTCTCTGGTTCTTCTTGGGTCTTCT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU563086 True 6740 lncRNA 0.40 2 10008303 10020235

Neighbor

gene id symbol gene type direction distance location
CI01000340_09994916_10004762 NA coding upstream 3150 9994916 ~ 10005153 (+)
CI01000340_09948209_09955176 PATZ1 coding upstream 52854 9947770 ~ 9955449 (+)
CI01000340_09935375_09945285 EIF4ENIF1 coding upstream 63018 9935319 ~ 9945285 (+)
CI01000340_09905529_09906314 NA coding upstream 101784 9905529 ~ 9906519 (+)
CI01000340_09890498_09895948 RUVB1, RUVBL1.S, RUVBL1 coding upstream 112032 9890498 ~ 9896271 (+)
CI01000340_10038089_10047331 FKBP5 coding downstream 17798 10038033 ~ 10048382 (+)
CI01000340_10066847_10072213 SLC6A13L coding downstream 44854 10065089 ~ 10072300 (+)
CI01000340_10081602_10083643 NA coding downstream 61367 10081602 ~ 10083867 (+)
CI01000340_10085575_10089504 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding downstream 65082 10085317 ~ 10089792 (+)
CI01000340_10097098_10098784 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding downstream 76245 10096480 ~ 10099068 (+)
G490870 NA non-coding upstream 61345 9946190 ~ 9946958 (+)
G491079 NA non-coding upstream 78606 9929382 ~ 9929697 (+)
G491080 NA non-coding upstream 81036 9926814 ~ 9927267 (+)
G491075 NA non-coding upstream 108158 9899908 ~ 9900145 (+)
G490875 NA non-coding downstream 1652 10021887 ~ 10028121 (+)
G490915 NA non-coding downstream 9003 10029238 ~ 10032325 (+)
G491108 NA non-coding downstream 95921 10116156 ~ 10119206 (+)
G492101 NA non-coding downstream 447965 10468200 ~ 10470924 (+)
G492136 NA non-coding downstream 455906 10476141 ~ 10476566 (+)
G490896 NA other upstream 163251 9831473 ~ 9845052 (+)
G490839 NA other upstream 770744 9234973 ~ 9237559 (+)
G490826 NA other upstream 876906 9125184 ~ 9131397 (+)
G490645 NA other upstream 965202 9038812 ~ 9043101 (+)
G489634 NA other upstream 3307515 6694221 ~ 6700788 (+)
G492194 NA other downstream 631448 10651683 ~ 10652694 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other downstream 763167 10781468 ~ 10787792 (+)
G492847 NA other downstream 1588871 11609106 ~ 11696961 (+)
G493617 NA other downstream 3035157 13055392 ~ 13069652 (+)
G493740 NA other downstream 3494992 13515227 ~ 13517111 (+)

Expression


Co-expression Network