G490915


Basic Information

Item Value
gene id G490915
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10029238 ~ 10032325 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU563121
TGACATTGATACTAGATTTAATGGAAAGCATATTTTTAATAGCTACATTTAATCCAAAGTTAATACATCTTACATTTAGAGAATACTTCTATACATTTCAGTGGAAGCATTTGTTTGAAAAAGAAAAAAGAAAAAGAGTATTTACAGTTTGTCGCCAAAAAAAGAACTTTCCATTTTACAATATCTGTTAAACTTCATAATACCGGTCTAGTCTGAAATATAAACATGCATGAGATAAGACATAAGAGGTACAAAGTTGGCTTTTGTAAGTGTTTTTGAAAACTTTTAAACAGATTTAAGATTAAATTTAAAATTTAACATTAACTTACACTGATAGACTGTTCACAATTTTGATTGAATTTTTTTCATCTGCCTTGCTTATATACTGTACATATAGCCTTATACAGTGCGAAACAGTAAGTGCCAACTTTTTCAGTCGTATTGGTTCCCAGGAGTATTTTTCCCATTATTAGTGCTGTCCCTACCTGACAGATCACTGAAAAAGGGGTCCTGAGATGTCACACCTGCCTCTGTGAAAAACAATGACCGTCTGATATCACTTAGCCAGACGACATTGAGGTACATTCTGCCGGCCAGTCATTTGGTTTTCTGACATTACGTTTGAGGGCAGGTTTTTTTAGATGGAGGTTACAGTCTATGTTCAGAAGAGCATACTTTCACAATCATTCTATTTTATGTATAGTATACTTTGCACAGTATGCAGCACTTTTAGATTCATGAAATACCCAGATGACCTACTACAACTACCAAAATGCGCAATACAACAGAGCACACAGTGTAGAATACTGCATCCCGCAATGCAACACGCTGACTTGACCTTCCAAATATGTATTTTGAGTAATTTCTAGAAATGTAACAAACTTTAATTAAAAGCAAAATAACTATTTCTTTTAAAGATCTAGACATCACTCACATGCAATTTGATAAATAGCATGCTACTGTCTAAAATTCTGTCAAATAATTCCTGTTTAACCTTACAATTTTTTTAAAACAAGGAGGCAGTATGTACTGCAGTATAGTTTGAGAGTGTCATCCAGATTTGCAATGCATTATGGGAGAAGGTGGTCACTGTTTAGCTCCTTTGCCAATAATTACATTTGTATTTCCATAGTAACAAGGACTTCTCTGATTGGTGGATCAGTCTTCAGAATTATGGGTAGTACAGTTCTTGACCGGGTATTTGGCAATTAAACATTTTTTTATGTGTGGCTTCTACAGAAAGATAAATCAATGCCTTATCTTTGAGTTTATGGTAGGTCTGTCTCAAAAGGTTTATTGAAAAGTTGAAAATTAATGGGATTTTTACTTCCTGGACCCTACTGTTGGGCTCTTTAATAGTCACCTAGACTCACTCTGCAGAAGAAAAGACACGTTGTCATGACAACGGCAAAAGCCGCATCTTTTAATTTACATAGAACCAAAGTGGGGGGAAAAAAAACACAAGCTTGCATAAAACTATAGGCTACCTCTTTTAAAGCTTGCAATTACTTCCGTCAGAATATGCAAATCTAGTTACATATTTTCAGTTCTTTATTGCAACCTCTTAATGAAATAGGTTACAACATATTTCTAAGTTTTACAACAATTTCCTGTTTTTGCCAGTTCCTTTAGCTATAGAATGCCGGTACATAGAAGGTTAAGGTTCGAATAGACTATTACCTCTCGCTTATGAGCAGGTCCATGCGTTCAGGCGAATAAAGACAGTGACACATGCCATGTTAATTCCACTTCTTAGACGTTTATATTAAATGTAATTAAATTGCAGGCTAAAAACAGACGACGCGTGTGCTGTGAGAAAGACCAGGTTTGTCAAGTTCAGTACCACTTCTTACCTCCGTTGCGCCGATGAGTCAGTCAACAGAGCCTCTACCGCACGTGCCACTGTGAACTAGAACATTTAGTTCTTGACGCGCGGACCTATTGATCTGAGAATCCAGTGGAAAAACGGACAGGATTATTCTCTTGACTGTAACCAAAAAATCGACATTATTTGGCGCAAGGTGATGCTCCTTATTGCATGCAGTTCTTTCAATCGTTTCCATGAACAATCCCCAATATATGAAAATTATGTTGTTTAATGTTAACATTTATAGCCTATATCATTGCTTAGCCTCATGCTTATAACTGCTAAAAATGTATAATCTTGTAGATATACAAAATAGGAATTATTTGAACAAACTTTCAATTGTGTTTTGGTTTATATTTATACATTTGCCATTTAATCATGGGACCTCTTGAGTGTTTTGTATCACAATGCAGATTATTGATATTCTCTCTACACATCTGAATCAGTGTGGTGTAATAATAGGCTACACTGTGTCCTTTCAGCAAGGATTGTTAAAAGTACATAGAAATTGTACTATGAAAGTATGGGATGCTCAATTAAAAGTCAGAGTCTAACCAAAAAGTATGCCCGTTTAATTGCAGGCCTATTTAAATATTCAAAAAAGAAAATTATATATATATATATATATATATTTTTTTTTTAGTTTAAAGCATGATGTAAGGCCCTAGAACACACCATATGTTAAATTAATTGAACTGAAACCAATACCCTAAAACCTGTCACTTTACATATTTGATATATAAATACTAAAAGTATGTTCTCTGCAGATGATGGATTTTTGTACCTACGTTTGTGTATGTTGAACAGTATGTTTTGGACATACTACCACTTAAAATAAATTGTGGAGGTCTCTGATATTAAACCATATTTTGTACTTTGTTTTATTTGACACACTAATTATTTAGTAGCTAATTTAAATCTAACAATGTCATGATTCCCGGTGTTTGTGTTCATGAACTTTTATTTTGATACTTTTTTGTCTTATCTCCTGTGTTCAGTTCCTGTGTGTTTAGTTCCTGTTTCATTGGTTGCCTTAGTTATTCATTGATTCATTGTCTCACCTGTTCCTCATCATCCTATGTATTTATACCTTGAGTTATCTTCTATTCTTTGTCTTGTGTTAATGTTTTGTGCTGGTGTTTTTATTTTCCTGATGTTTATTAAATGTGATATCATTGTTCATCTGCATCAATCCTATTTGAATCTAGATTATAAAGTCAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU563121 True 3088 lncRNA 0.34 1 10029238 10032325

Neighbor

gene id symbol gene type direction distance location
CI01000340_09994916_10004762 NA coding upstream 24085 9994916 ~ 10005153 (+)
CI01000340_09948209_09955176 PATZ1 coding upstream 73789 9947770 ~ 9955449 (+)
CI01000340_09935375_09945285 EIF4ENIF1 coding upstream 83953 9935319 ~ 9945285 (+)
CI01000340_09905529_09906314 NA coding upstream 122719 9905529 ~ 9906519 (+)
CI01000340_09890498_09895948 RUVB1, RUVBL1.S, RUVBL1 coding upstream 132967 9890498 ~ 9896271 (+)
CI01000340_10038089_10047331 FKBP5 coding downstream 5708 10038033 ~ 10048382 (+)
CI01000340_10066847_10072213 SLC6A13L coding downstream 32764 10065089 ~ 10072300 (+)
CI01000340_10081602_10083643 NA coding downstream 49277 10081602 ~ 10083867 (+)
CI01000340_10085575_10089504 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding downstream 52992 10085317 ~ 10089792 (+)
CI01000340_10097098_10098784 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding downstream 64155 10096480 ~ 10099068 (+)
G490875 NA non-coding upstream 1117 10021887 ~ 10028121 (+)
G490880 NA non-coding upstream 9003 10008303 ~ 10020235 (+)
G490870 NA non-coding upstream 82280 9946190 ~ 9946958 (+)
G491079 NA non-coding upstream 99541 9929382 ~ 9929697 (+)
G491108 NA non-coding downstream 83831 10116156 ~ 10119206 (+)
G492101 NA non-coding downstream 435875 10468200 ~ 10470924 (+)
G492136 NA non-coding downstream 443816 10476141 ~ 10476566 (+)
G492137 NA non-coding downstream 445132 10477457 ~ 10477664 (+)
G492139 NA non-coding downstream 446265 10478590 ~ 10478848 (+)
G490896 NA other upstream 184186 9831473 ~ 9845052 (+)
G490839 NA other upstream 791679 9234973 ~ 9237559 (+)
G490826 NA other upstream 897841 9125184 ~ 9131397 (+)
G490645 NA other upstream 986137 9038812 ~ 9043101 (+)
G489634 NA other upstream 3328450 6694221 ~ 6700788 (+)
G492194 NA other downstream 619358 10651683 ~ 10652694 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other downstream 751077 10781468 ~ 10787792 (+)
G492847 NA other downstream 1576781 11609106 ~ 11696961 (+)
G493617 NA other downstream 3023067 13055392 ~ 13069652 (+)
G493740 NA other downstream 3482902 13515227 ~ 13517111 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) G51935 NA non-coding NC_053116.1 CM020913.1 21914325 ~ 21914837 (+)
mexican tetra (Astyanax mexicanus) G51401 NA non-coding NC_035902.1 CM008305.1 11713747 ~ 11715615 (+)