G491915


Basic Information

Item Value
gene id G491915
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10032320 ~ 10034890 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU564266
TTGTGTGCTGACTGAACAGCTCAAGTTGGGAACAGCGTGTACAACCACACAGTCAAGAGCACAGCGATACGCGGAAAGAACAACACGACTATATTATGTTTAAAAACGTGGAGGTTAAAAGTGATATAATGCATTGCAAAAAAAGAGAAGAAAAAAAAAGAAAAAAAAAATTCCTGTTGCGATAAAATTGAACGCTGAAAGAAATGTACGGGTAAGATACAATGACAACGTTTTACTGGATGGCATTTTGCTCTCCATATATTGTATAATTTGCATAATAATACAGCTGATAATGAAACTTAAAGCCACATGATGAATTAATGTTCATTAATCATGCCTAAACACCATCAGGGTAACACATGACACTAAAATAATATTATAGACCTAAATATTAATAAAATAACTTTTATTAACTGTTGTTTACATAACTGGTTACCAAAATCAGAAGAAACTTTATTTTTTAAATAAAATATAATCAGATGTTATGTCTCATGCTGGGACCTCTGGGAATGTCCTTCTACTTTCATCTTTAAGGATATTGTATTTTTTTTTTTTTTTTACAATACTGCATTGTTAATGTACATTTTCACATATTTTCACATTTCAAATCATTTTGACTTCCATTGATTATAGTATTTTACAGTAAAATTACATTTATTGTCCGCTAAATCAATATATTTCATTCTGTATTGTAAGGTAACAACCATTTAACAGTTTTTACAGTAAAGTCAAAACATTCTTAAAGTGTGTAAAAAATGTTTTTCTGTTTAAGATGATACATTGCCTATTGTCATTTATATAAAAAAATAATAATGCCAGACAGCTGTAACACTGGACATTTTAAGCTAAGCAGTATCTTAAATAAATTATATTTGGATTTCATTTCTACACAGAATAATTTATGTTGAATATGTTGAAATCAAATCCAGCTTTTCAAGTTAGTATGCCAAATAACATAAGCACTGGCAACACGTTACCTGCCTCAAAAGCCTCTCTAGACTGGAACTGTAACAAAATGTTCCCGATTCATTCACCAGAGCAACAAGAGGTGTCAGCAGGAACACAATAGGTGGCATACGTGATTGTCTGCATTTAAAGGGATTGATTTCCCTTTTCAAGCCTGATTTTTTTACACAATAATTTTAGATGGATAGTTAATCCAGGAACATGGTGTGAGTGACAGAATGGGCTCTGTTTAAGAGGTTCAAGTTATTTAAGATTCTCTGCAGATATATCAGGGATATATGATAATCCAGAGAAATGCTCTTTACCTCATTTATTTGATTGATTTGTAATACTGAAATATTTAGGATATATATATTTTCAAATGTGCCAAAAATGTAATGAATTAAAATCACAGATCTCTAATATAATGTCAGCAGGCCTGCAGCTTTTCCAGGATTATCTAGGCAGTACATTAAAGTACTCAAACATGGAAAAGAGAAGAACAAAATGCTGCCTCGGTTTGGTATCTTAGCAGCAGGGATCTGCGACAGCTTATAATGTGAAACTGCTCAGTACGGATGGTACAAGAAAACAAGTGGGGGGCATTCAAGGATAAGGATTCAGACCAATATGTCACACTGCCAACAAGGTCCAAGTGGGGACACTTCATGTAAACTTGTTTGACCTTTTTTTCCTGTTCGTGTTCAGTGATCATATTCCAGTCTAGCAGATCAAAACCACTCTGTTAATTTTAATTCATCATCAACATTTTTTCTGACATGAAAATTAAATGTAAAAAAACACTTGTGGTTATGTTTTCAATTTACAGACATTTGTTGATAAAGAAATGACATTCTTGACTAATGTGATGATTCCATTGTGGTTTCATTACATCAAAAGATCTTTTAAATGAACATAGTTTGTAAATTTATGAATCTCAACGTTTTCAGTGTGGACCATGAACCCACACTGTAAGCCCATACAAGTTGATTGAACTTAAAAACTTGTTGCCCTAAAAAAGTTAATTTTGTATTGCTGAACAAACAAGACATATCAAGTTCTTTACATTGGAAAGTGTTAGTTTACTTGAACTAAAATATCCTGTTACAATAACTAAAATTTACCAGTTTAGGTAACTCAAAATATTAAATTGCACTAAACTAACTTTTATTTGATTTAATTTGATTGAGTTAAATTAAATAACTTGATTATCTTTGCAGAATTATTATTTTTAAGTTACACAGTTAACAAGGACAAAAATACTTACAAAAAGGATTTGCAGTTTCTTATATATCATATTTCATACAGGAAAAGTTAGTTCAGTCATATATTTTATAGTGTTATGAACAGTTTTGCTGACAACAGGGTTATAAATTATTATATATGTGCCTCATATACTCAAGCAATATTTTAGGTAGAGGTTTAGATTTATCAAGAACATCTGTGGCTTGTGGTTTATTAACCACTAATTGCTGGCCAATCACAACCTATCACTGAATTCCTGGTCTCTTTGCATTAACTAGATTTAAATTTTTAGCATAGTTGAAAGATTGGAGATAAACAATAAAATAAAATATGCATACTATCATATCCTATTTGTTATGTGCGTCACACACTGGCTTGACT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU564266 True 2571 lncRNA 0.31 1 10032320 10034890

Neighbor

gene id symbol gene type direction distance location
CI01000340_10025958_10028902 SRSF3 coding downstream 2731 10025656 ~ 10029589 (-)
CI01000340_10005818_10020244 NA coding downstream 12076 10005692 ~ 10020244 (-)
CI01000340_09987410_09989834 NA coding downstream 40808 9987308 ~ 9991512 (-)
CI01000340_09985390_09986420 HDHD3 coding downstream 45900 9985175 ~ 9986420 (-)
CI01000340_09961043_09968792 SLC2A11A coding downstream 63335 9960995 ~ 9968985 (-)
CI01000340_10051115_10063764 SLC6A13 coding upstream 15634 10050524 ~ 10064237 (-)
CI01000340_10117381_10122090 SYNPR coding upstream 81832 10116722 ~ 10122090 (-)
CI01000340_10258762_10264352 NA coding upstream 223663 10258553 ~ 10265625 (-)
CI01000340_10270796_10271185 NA coding upstream 235540 10270430 ~ 10271269 (-)
CI01000340_10357202_10357606 NA coding upstream 321868 10356758 ~ 10359856 (-)
G491993 NA non-coding downstream 72310 9959744 ~ 9960010 (-)
G491992 NA non-coding downstream 73939 9958146 ~ 9958381 (-)
CI01000340_09898618_09904814 RFT1 non-coding downstream 133383 9898618 ~ 9904814 (-)
G491983 NA non-coding downstream 164967 9867049 ~ 9867353 (-)
G491980 NA non-coding downstream 173775 9858271 ~ 9858545 (-)
G492001 NA non-coding upstream 30639 10065529 ~ 10067185 (-)
G492000 NA non-coding upstream 37142 10072032 ~ 10073240 (-)
G492005 NA non-coding upstream 61782 10096672 ~ 10102409 (-)
G492017 NA non-coding upstream 90151 10125041 ~ 10125278 (-)
G492020 NA non-coding upstream 94170 10129060 ~ 10129260 (-)
G491712 NA other downstream 1232743 8799201 ~ 8799577 (-)
G489511 NA other downstream 3704948 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3811678 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4707176 5320753 ~ 5330215 (-)
G493109 NA other upstream 1638856 11673746 ~ 11677994 (-)
G493266 NA other upstream 2032287 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2577326 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 4178458 14318365 ~ 14336258 (-)

Expression


Co-expression Network