Gene
RNA
| Item | Value |
|---|---|
| gene id | G492000 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 10072032 ~ 10073240 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU564364 | True | 1071 | lncRNA | 0.37 | 2 | 10072032 | 10073240 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_10051115_10063764 | SLC6A13 | coding | downstream | 7795 | 10050524 ~ 10064237 (-) |
| CI01000340_10025958_10028902 | SRSF3 | coding | downstream | 42443 | 10025656 ~ 10029589 (-) |
| CI01000340_10005818_10020244 | NA | coding | downstream | 51788 | 10005692 ~ 10020244 (-) |
| CI01000340_09987410_09989834 | NA | coding | downstream | 80520 | 9987308 ~ 9991512 (-) |
| CI01000340_09985390_09986420 | HDHD3 | coding | downstream | 85612 | 9985175 ~ 9986420 (-) |
| CI01000340_10117381_10122090 | SYNPR | coding | upstream | 43482 | 10116722 ~ 10122090 (-) |
| CI01000340_10258762_10264352 | NA | coding | upstream | 185313 | 10258553 ~ 10265625 (-) |
| CI01000340_10270796_10271185 | NA | coding | upstream | 197190 | 10270430 ~ 10271269 (-) |
| CI01000340_10357202_10357606 | NA | coding | upstream | 283518 | 10356758 ~ 10359856 (-) |
| CI01000340_10468562_10470670 | CAV3 | coding | upstream | 394823 | 10468063 ~ 10472083 (-) |
| G492001 | NA | non-coding | downstream | 4847 | 10065529 ~ 10067185 (-) |
| G491915 | NA | non-coding | downstream | 37142 | 10032320 ~ 10034890 (-) |
| G491993 | NA | non-coding | downstream | 112022 | 9959744 ~ 9960010 (-) |
| G491992 | NA | non-coding | downstream | 113651 | 9958146 ~ 9958381 (-) |
| CI01000340_09898618_09904814 | RFT1 | non-coding | downstream | 173095 | 9898618 ~ 9904814 (-) |
| G492005 | NA | non-coding | upstream | 23432 | 10096672 ~ 10102409 (-) |
| G492017 | NA | non-coding | upstream | 51801 | 10125041 ~ 10125278 (-) |
| G492020 | NA | non-coding | upstream | 55820 | 10129060 ~ 10129260 (-) |
| G491908 | NA | non-coding | upstream | 64005 | 10137245 ~ 10222822 (-) |
| G492037 | NA | non-coding | upstream | 162607 | 10235847 ~ 10236277 (-) |
| G491712 | NA | other | downstream | 1272455 | 8799201 ~ 8799577 (-) |
| G489511 | NA | other | downstream | 3744660 | 6320457 ~ 6327372 (-) |
| CI01000340_06095704_06194498 | MAST2 | other | downstream | 3851390 | 6095704 ~ 6194501 (-) |
| CI01000340_05321995_05329778 | ATG4C | other | downstream | 4746888 | 5320753 ~ 5330215 (-) |
| G493109 | NA | other | upstream | 1600506 | 11673746 ~ 11677994 (-) |
| G493266 | NA | other | upstream | 1993937 | 12067177 ~ 12116900 (-) |
| CI01000340_12577571_12625562 | PTPRG, PTPRGA, CA16B | other | upstream | 2538976 | 12577435 ~ 12625758 (-) |
| CI01000340_14318434_14336130 | NA | other | upstream | 4140108 | 14318365 ~ 14336258 (-) |
