G492005


Basic Information

Item Value
gene id G492005
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10096672 ~ 10102409 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU564370
GGAGACATGCAAAATGTGCAGTGCTGGGGGGCCTCCAGGAACGTGGTTGGGAACCACTGGCCTAAACGATACGAACGCTGCGAAAACCCGCACGATGGTGATTATGCCCAAATTGATCAATGACTAAAAGAACAAAATCTGTGAGAGGTTAAAAAGTCTATGCTGGAGATACAGAGGACACCTCCGTCTTGCTGGTGGACACAGTTGAGGACTCGTCATCACCAAGAGGATTCTTTCCACAGAAAATAGTGGTCAGCATGCAGCTCCGGAACTGTAAAAGACAGTGTTTCACTTAGTACTTTTTGGGGTTTTATACAGCTTTTTATTGATAGAGACAATAGAGAGAGGAGAGGGAGTAGAGCAGGAATGGGATGTCTGGCATAGGAGAAGTCAGATATATGATTAACCTGTTTGTTTAGCAGCACATAGATGACAGGGTTATATAAGGCCGAGGTCTTTGAGAAAAAGGCAGGAACAGCCATGGACTGGGCACTGAAAGCAGCTCCCTTATTAAAGAAGATCCAGGCAGCAACACTGGCATAAGGGGTCCAAGCCACCAGGAAACCCAAAACCATCAGGATGACCATTTTTGTCACTTCCCTCTCAGCCTTCTGGGTAGATGCTGAGTCCTGCTGTTGAGCTGCAGCCTAAGAGAGCACAGAACAGCCAATTTTTAACATCGTATTTCAATAGGTGAGAATTTACAGGAATATTTAACATGACATTTCATACCGCCTTGACGGTGCAAACAAGTCGGCCATAGGTGAAGAAGATTACAGTGACCGGAAGTATAAAATGGCAGGAGAACATGTAGATGACATATGATTCATTGTTGTATTCAGGATTCAGGGTGTAGTAGTCTGGTCCACATGAACACTGCATTCCCTCAGGAATATATCTGTTAAAGAAAAGCACCTGATGTTAGGAAACTTCAGTCAGAGTAATATATGTTGTACCTAGGCATTTGAAAACAACTACATTAGTACAAATTATGCAATTAAAAATTAAGTGTGACTGTTACACTGGGAAAAGCCTTATTTACATTGAAAGTAAGCCATCCCTGTGTATCGATTAACATGTTGCCTTTTAAAAAATGAAAATGCCTCATGTTCAACTGGAATGTTTGTTATAATCACTGCACTGGAGAGCAAAATAATTGCATGTGTAATTAAACCAACCTGGACCAGCCAACCAGAGGGGGAGCCGCACATGCCATGGCCATTATCCATGTAAATGCGATTCCTGCCATTGCGTGGGTGGATGAGAATTTAAAACTACCCATTGGCTTACAAACCACAATGTATCTCTCGATGGCCAGCACCACAAGTGACCAAAGGGCAACTTCACCTGTGTGTGGCAAGTAAAATATACAATTCATTAACACCCTACAATTACAGCCAAACATACTCTACTTTTAACATTCCCCAAAGTAATTCCTCAGAGCATTCAAAGTCAAACAAAAAAACATTAAAACTTCTCTTACCTCCAAGTGTGGCCATGAAGCCCTCAATCGCACAGCCAATTGGACCCAGAGCAAAGTAGCCGTGAATTGCTGTGTAGAAAGTGACTGTGAATCCAAAACAAACCATGATGGTACCAGCTACAGCCAGGTTGACCAAAATGAAGTTGAGAGGTTGCCTAAGCTTTTTGTGTTGAGCTGTAACCACCAATGTGAGGCCATTGATGGGTAGACCCAAGCAGATGAGGAAGAACATGTATACAGCAAGGATTTTAAACTGCCACGGCTCAGCTAGATAATACTGCGGATACTCGAAAGGACTCCTCACTAGCCCTGTCCTGTTGGACATGGGGATGTAGAAGTTGTTTCCCTCAGTGCCGTTCATCTTTGCCCACTAGTGATCCAGAGGGATGTAATCTGCTGCTGTGGTACAGCTGAGTGACTGCTCTTCATCTGCTCTTTATTTGCAAAGATGCATCAGGAGTGGTTATATATGCCTCTAAGATTCCTTATAAGGGATAAATCCAGGAGCACAAGGTGGGGAGGGTGTTGCAATGTGGGATTTGAATAAGAGCAGACATAATCACTTGTGGACTAATTACCTCATGAAGCCTTAGATGTTGTTTTTTCACCTTTTTAGGGTCATAAATTAGGGCATATATTGATATTGATATTAATTGACAGTACAAAGTGAGTATAATCAAAGCTGTATTTATTTCAAGGATAAAATGTAAATTTAAATGTAATCGTTGTCTGGTGTAGTCCAATAGTGATATGAAAGTAACACAATAGCATATTAAAATAACAAAAT
>TU564372
GGAGACATGCAAAATGTGCAGTGCTGGGGGGCCTCCAGGAACGTGGTTGGGAACCACTGGCCTAAACGATACGAACGCTGCGAAAACCCGCACGATGGTGATTTGTCTTGGTAGAAAGTGGAGAATGACAGGAAGCGAAGTGGTAGAGAGAGACAGAGAAAGTGGACCACGAGGTTTTGAACTTGGATCACACGAAACAACAAACGTGCAGCGCGTGGGAGCGATGACCGTGAAGCTATCGAATCCGACACCCGTTATTATGGCTTACTTGTATGGAAATGAGCAGCGCGAATATTTTGTGTTCCACAGAGGGAAACTATACAGGTTTTGAAAGACATAAGGGTGAGTAAAATAATGACATTTGAATGCAGTCTATTTATAAAAAAAAGTTGGCTATTTGTAAAAATCCTTATACAGTAAGCGTATAAAGGGCTGGAAAAGCCATGAAAATATTTTTTTAAGATAATAGGCTAAACTTGGATAGTTGGAGGCATTAGCCCCATATAGGCTAGTTTATTAAAAGAAAGAAAAAAGTCTGTGTTGGCACACTGAGCAAAATGACGTTCCTGCAATTAATGGATTAAAATTTTGTAAACAATCAAATAAAAGACTCTTTTGATGCTATGTCGTATAACTCATTTAATTATTGATCTAGGCTCGTTCTTTATTCATAATATTCATCAAAACACTAGCTTGAGCTTCTGTCAGCTCTGCACAATCTGAACAGTCTCAACCAACTCCATCATTTGCATCCTTAATTAAATGATTGTTAAAGTTCTCGTTATAGGCAGACTTTATATTTGCCTGTTTTCATTAATTGTAGGCCTTTTTTTTTTTCCTGAGAGTGTGAGAATGAGATAGCAGATGCCAGTGTGTGTATGGTCCGAGTTAGGTGAGGAAGTAAAATCATAAAAATCAATGGCAGCAAGTCTTTTCTGAACTATTTTGCTGTAGCCTATAGCCATAACACGAGTTAATTATTTTTTAAAGTCTGTGCTTGTTACTTGCTTGGATGTCTAGCAGGTTGTTGTTCCCAATGAACAGGATCAGTGGGGGCATTAAAATGATCTAAAATATCTATAAGAATAGCAAAACATTTATATTTATTTATTTTGACGTTGGGGTAAAATAGGACCTGGACAAACAGGAGTATATATGTAGCCTGCGCTATACAATAGCGTTTTTCCACAGCTCAAAGTGCTTTACAAACAACAGTAAGCTAATCAGATCAAAACAATATAAACATCAAACACCACACAATTCCCGCAAATTCTAAGACAAGCGATGTCCGACCCAAAAGTCCAAAACGAATTCAGTAAATAGCCTATGACATAAACTGTGTTGTGTAATGCGTTGCAAAGTGGGGGCATTCTCGTCGACCCGCATCTCGCATGCCACCGAGCCAACTTTAGGACCAAAAAAACGGGAACAAACGACCACCACACCACGACATACACCGGTCAAAGATCCAGCCGCTCCGTGCTGCACACACCGTCAGGCAGGCAGGTGAAAGGCGGGCAGATGAAACAACGCAGCAGGCAGTGGAACGCAGCAAACCGCGAACACAAGCGAAAATCTGTTGAGATCCAAAAATGTTAATTTTATAAATGTTTGAAATAAAGAAAAACATTTAAAAACGACTACAGCAACAACTTGACAATACAAACACGCAGCTCCAATATGAAGTGACAGTCAAACGCACG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU564370 False 2270 lncRNA 0.42 2 10096672 10102409
TU564372 True 1703 lncRNA 0.40 2 10100598 10102409

Neighbor

gene id symbol gene type direction distance location
CI01000340_10051115_10063764 SLC6A13 coding downstream 32435 10050524 ~ 10064237 (-)
CI01000340_10025958_10028902 SRSF3 coding downstream 67083 10025656 ~ 10029589 (-)
CI01000340_10005818_10020244 NA coding downstream 76428 10005692 ~ 10020244 (-)
CI01000340_09987410_09989834 NA coding downstream 105160 9987308 ~ 9991512 (-)
CI01000340_09985390_09986420 HDHD3 coding downstream 110252 9985175 ~ 9986420 (-)
CI01000340_10117381_10122090 SYNPR coding upstream 14313 10116722 ~ 10122090 (-)
CI01000340_10258762_10264352 NA coding upstream 156144 10258553 ~ 10265625 (-)
CI01000340_10270796_10271185 NA coding upstream 168021 10270430 ~ 10271269 (-)
CI01000340_10357202_10357606 NA coding upstream 254349 10356758 ~ 10359856 (-)
CI01000340_10468562_10470670 CAV3 coding upstream 365654 10468063 ~ 10472083 (-)
G492000 NA non-coding downstream 23432 10072032 ~ 10073240 (-)
G492001 NA non-coding downstream 29487 10065529 ~ 10067185 (-)
G491915 NA non-coding downstream 61782 10032320 ~ 10034890 (-)
G491993 NA non-coding downstream 136662 9959744 ~ 9960010 (-)
G491992 NA non-coding downstream 138291 9958146 ~ 9958381 (-)
G492017 NA non-coding upstream 22632 10125041 ~ 10125278 (-)
G492020 NA non-coding upstream 26651 10129060 ~ 10129260 (-)
G491908 NA non-coding upstream 34836 10137245 ~ 10222822 (-)
G492037 NA non-coding upstream 133438 10235847 ~ 10236277 (-)
G492050 NA non-coding upstream 227452 10329861 ~ 10339931 (-)
G491712 NA other downstream 1297095 8799201 ~ 8799577 (-)
G489511 NA other downstream 3769300 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 3876030 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 4771528 5320753 ~ 5330215 (-)
G493109 NA other upstream 1571337 11673746 ~ 11677994 (-)
G493266 NA other upstream 1964768 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2509807 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 4110939 14318365 ~ 14336258 (-)

Expression


Co-expression Network