G491108


Basic Information

Item Value
gene id G491108
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10116156 ~ 10119206 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU563384
CCTCATTTCAGAACACCACTGCACGCCACTGGTTGAAAGATACAGTACAACTTACTGAAACGTATCATATCTCGTGTAATCGCTCATCTACCACCATATGCATACAGTGTTTCAACCGCGGAAAGATGTAATTAAAACAGTTTGTAAACAATATGCTACATAGTATTACATTTACCTCAGAAAAGCAATTCAGTGTCAACAGCTTGTTAGTTCGCTAGAGAAATGAACTGTTTCACTAAATAAATGGACTATATTAGCCTATATATTAATTATATTTTACTTAACATGTTATTTAATGTAAGGCCTAAATAAATACGTCATGAAAACAAGTTACAGCCACTGTGTAAATGATTATATTTCAATATAATTCGAATTGGAAACAGAAGTTAATGCAAAAACTGCAAAAAAATGTTATTATAATTGAATACATTTAAAGACAGAGACAGACAGAGTAGAATTCTGTAATGTTTAGTTGTTGATTTAAAATTCTACTATGACTCTACCGTATGTGTACTACGGTAGTTACTGGAATAATTACTTCTAGAGATCTCCAAGTAGGTCAAGCATTTATTTGTGGTTTTAGGTAGTAGGTGGTGGTGGCTGCAATCAACATGTATTGTATGTAGCTGTAGCTTCATGCTTTATCTTTATAAGCCCATGACCATGACCCTGCCTAAGAGCCAGAAGTGACAGATGGATGAACAGAATGACAAAAATTGGACTGCAGTAGAGTAACAGCGAGGGTCAGTCCTGCCTCCTCTTCACGTACACTTGTACCTCCTAACATCGAACACCATGACATCTTTTCATTTGCTCGGCTGAGTCTATGATTAGCTTAGACTCCGTCCCCTAGAGTAAAACATAAGTGCCACTGCGACATCATTTGTCACCGTGTAAGATGATAATTCTGCCATTATGTAATTAACTGTGTAAGCGCTCTTAGGGCGATTTTAACACTCCTTAACTAGCCTTACACTCTAATGTTAGTGTGAATTTACAGTATTATTTAGTACAGTATTCATTGACTGTTAAATATTTTAAAAATACTGGCAATATATACAATGTAGAGCATGTTTGACACGTGTTAATCAAAATTATACGTGCATTACTGCCTTGCATAATCATATCTCTCTGTTTTCTAGCAAGCACTTTAAATCACTCTCACTGCACTCTTTTAGTCTAAGGCCTGTAATTGAACAGCTGTAGAGTTTCTCAATGGTAACCTTTAATTTGGCACCAGCAACATGCCAGTGGCTAAAATCTCATGATCACCTAAAAGCTGCAATTTGGATCCTAGGCAGCTGCAAGCAGTTAGTTTCACTGTAGTGCTGGATATACTCTACAGATACAGAGATGTTAACCACATGGCTCTGATAGGGCTCTGACAGGCCAAAAGATCCTAATTGCTCCCTTACACCCCTTCATTAAAAGGCTTAATGGGGGAAACAAGTAGCTTCAGAGGTGGATATTGTCTCTTGTAAAAGACGCTGCAAACAAAGAATCAACGCAAGAGAACCTCTGATAGAATAAAAGATAATTCACTTTTGAGTCCCCAAATGAGATTGTTTCTGTGTTCTTGTTTGAATGTTCCTTTTTGTCATTTCAACTAAGATTGCTCATATTGTTTTTCCAGGAACAAACTGAAATGGTAATGATAGCATTCATTATGGTGAAATACATAAAACAGCCATTTAGAGGAATTAGTATAATTTTATTACTTAATTTTAAGACGCAATCAGTTTCCATATAACAGTTTTAAATCCTACAATAAACTGACTTTATTTGTCAGACTCTTTTGCATGCATTTCACTGAACACTGTGTGAGGTTAGACAGAATGATTCATTAAAAAGATCTCTGATTGGAGGACATAATCCTCGACTTTCAGGGTTCCATTCAATTCTCTGGCTCAAACCATTTGCTTTTTCCAGGCGCCTACTGGTAATTAATCATTAATCATAATATCATAACATTAAAAAAATAAAACATACAACAAAGTAGCATGGTATTAGTAGTTTTTTGGACATGCTACCATGTCCAAATGATAGTTATACCATGCTATTCTTTAAAGTACCTTCAAGAAGCCAAAAAGTAAATGCCATATCGGAGTACCATGGTATTGCCATCTGATGTCTTTACCACAGTACTGCCACTGCCAAATATTTAAACATGAAACATAGACTGTTAGAATGTAGGCATACTATGCTAAAAGCCATTCAAATACTGCAGAATTATCACATTATCAACAACCATATAAGAGACGGTAAATTCAGATGCAAAATAGGTTATATACTATATCAAGATAGAACTTTCAGTTCAATGTGACTTAATTGTACATTTCACAATAGATTTATATTACAGCTGTGGCATGTTGTAGCTATAGTTTCTAAATGTGTATATAACAAATGCTCATAACACATGGATCAATAAAAAAGAAAAAAGTCAACACTGGCATAAGGAAGAGCCATCGATGGTCTCACCTGTAATTATAGCCTTATTGTAACAAATGCTACAATTTAACAATTACTAGAACTATTGTACATTTTCATAAGGGCAAGTACAGGCTTAAGAATACAATAAACAAATAAATAAAAGTATGCAGACTGATTTCTACAAAAATATCACAATTTCTACATCTCATAATATAAATATCAAATTCACAATGACAAATTGAAAACATCAGTGTTGGCAGTTATTTCTTTCAATTTTCTTTCTCTTCTCCACACTCACAGTCTCTCTCACATCTCATTAACAAATATGAGAGGGCCTCTGGATGTGGGACTCCCCACCTGTCGGTACAGCATCGGCTGTCCTAGACTGGTTTGGGGTAGACTGAAGCCTCCGCTTGATAAGTCAAAACTCGCCTGGTTGTAGAGCCTCTGGCCAAAACCAGTTCCAGATTGATCAAAACTGGTTTGACTGTACTGCCTGAAGCTGCCGCGTTTCTCAGAGGGAGTTCTGGAGGGATAGCGCTGGATGGACTTATGCAAACCTGTCTCTTTGTAGGCAAACCAAATATTACCAGCCCAAAGGAAGAAGTTCAAAAAACCAAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU563384 True 3051 lncRNA 0.36 1 10116156 10119206

Neighbor

gene id symbol gene type direction distance location
CI01000340_10103264_10104931 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding upstream 10962 10102271 ~ 10105194 (+)
CI01000340_10097098_10098784 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding upstream 17088 10096480 ~ 10099068 (+)
CI01000340_10085575_10089504 OPN1MW4, OPN1MW1, OPN1MW3, OPN1MW2 coding upstream 26364 10085317 ~ 10089792 (+)
CI01000340_10081602_10083643 NA coding upstream 32289 10081602 ~ 10083867 (+)
CI01000340_10066847_10072213 SLC6A13L coding upstream 43856 10065089 ~ 10072300 (+)
CI01000340_10137511_10221465 CADPSB, CADPS coding downstream 18305 10137511 ~ 10221465 (+)
CI01000340_10223734_10225662 RSG1 coding downstream 104528 10223734 ~ 10226212 (+)
CI01000340_10227896_10249819 TWF2, WDR82P1, WDR82.L, WDR82.S, WDR82, SWD2 coding downstream 108690 10227896 ~ 10250768 (+)
CI01000340_10252718_10253859 NA coding downstream 133512 10252718 ~ 10254453 (+)
CI01000340_10296583_10355505 SRGAP3 coding downstream 177377 10296583 ~ 10356100 (+)
G490915 NA non-coding upstream 83831 10029238 ~ 10032325 (+)
G490875 NA non-coding upstream 88035 10021887 ~ 10028121 (+)
G490880 NA non-coding upstream 95921 10008303 ~ 10020235 (+)
G490870 NA non-coding upstream 169198 9946190 ~ 9946958 (+)
CI01000340_09935375_09945285 EIF4ENIF1 non-coding upstream 178556 9935319 ~ 9945285 (+)
G492101 NA non-coding downstream 348994 10468200 ~ 10470924 (+)
G492136 NA non-coding downstream 356935 10476141 ~ 10476566 (+)
G492137 NA non-coding downstream 358251 10477457 ~ 10477664 (+)
G492139 NA non-coding downstream 359384 10478590 ~ 10478848 (+)
G492142 NA non-coding downstream 363083 10482289 ~ 10482510 (+)
G490896 NA other upstream 271104 9831473 ~ 9845052 (+)
G490839 NA other upstream 878597 9234973 ~ 9237559 (+)
G490826 NA other upstream 984759 9125184 ~ 9131397 (+)
G490645 NA other upstream 1073055 9038812 ~ 9043101 (+)
G489634 NA other upstream 3415368 6694221 ~ 6700788 (+)
G492194 NA other downstream 532477 10651683 ~ 10652694 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other downstream 664196 10781468 ~ 10787792 (+)
G492847 NA other downstream 1489900 11609106 ~ 11696961 (+)
G493617 NA other downstream 2936186 13055392 ~ 13069652 (+)
G493740 NA other downstream 3396021 13515227 ~ 13517111 (+)

Expression


Co-expression Network