G492050


Basic Information

Item Value
gene id G492050
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10329861 ~ 10339931 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU564419
GGTGGAATAGCATTAGGACAGCTGCTGGAATGGCTTGAGATGCAGTAAAGGGAGACGTGTGGAGAACGTGATGCCCTTCAGTTCATTTTTTCCTCTGCTATTTAAAATGTTTTTTTTTAAATAGTTTAAGTTTAAGGGGTAATCGACCACTTAATTGTGTAAATTAAGCATCAGGGCAGTTGCTTAATAACTAATGGGCCCTGCAGAGTCTCTATTTAGGCAGGAGGGCATCAGCTGCCACCCTTATCATCTGCATCATCGCCACCTGGCGAAAGACGGAAATTAACAGAAGCAAATAGAGGGTGTAAGTGCATGAGTCAGTCAGAAAAGACAGCCAGAGGTTTAGCTATCCCTCCAGCCCACCAGAGGGCACTGTTAGCACCAAAGTCAGTGGGTACCTTAATGAAACTCTCCATATTGCCATTAAACAGCTTATGGTTATAGATGGAACGAGGCCTTGGTTTCCGCAATTTCTGTGGTTTCGGGGGAAGGGTTGGGGGTCTTGTAGTTCCACATTCGGCCCTTTCTCCTTCCCCCAGAGTCTGTTTCAGCAGGTCATGCTTGGCCTGCAGCTTAATGATGAGGTTACTGCCGTTCAGGTACTCCTTGAATTTAGTGAAGTAAAAGACTTCTGTCTCCTGCTGATTGGCTCGTCTCTTAGCAATGTTTAACTTGCTCATGTAGCTCTCGGAAGCCACGGATTTAATGGACTCTGTGGATCGGCTGTGCTGGAAGGCGTCTGACACATCAAAGTCCTCAACTGTCAGCATGTCTTGTAAGGTCTGCATGGTGGCATCCAGGGTTTTGCGTACTCTTCGTTTTCAATCTTGAGTGTAGCCAAGCGGGACTGCAGTTGGTGGTAACGCATCAGAAGTTCGGTCTGCACGGGCTGCTGGGCACTCACCTGGCACACCTCATCTCCCATGTGCGGCAGAAACTCAAAGCGCATGGGTGGGCAAAACACCTGATTGTACATGTCCATGATCTTGTGCTTGTCGCTGCGAGGGTCCAGGTTGTCTACTGCATTCTCAATAATGTCCAGACCCTCATGGCGCGATGTCTCCAAGTTATACTCAGCAGACAGATACGTCCTTAATGTGCGCGCCAAGCTAGCATGATATCCGAGATCACAGCACTGTGGAAAGAAGAAGAAAAATCAAAGTTGAGAGATAAAATATCTCACAGCAAGCCTACATGACATTTAGATGAACACCAATCCGATCTTTCTTCCTAAGAAGACAGTATAAATGAAACTTTATTTGTCAAAATGTTTCCATGGTGATGCCTATTTTTATCAGTCTTGAGATGTCACATTTCACTCTGGCAAGATGAACTGTAAGACAGGTAGCATCTCCTGTATCTCAGTGGATGGTATTGTCATTAAAACGACTTGATCTAAATGAGTGAATTTCATCCTGCGGAGAATCGAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU564419 True 1430 lncRNA 0.46 6 10329861 10339931

Neighbor

gene id symbol gene type direction distance location
CI01000340_10270796_10271185 NA coding downstream 58592 10270430 ~ 10271269 (-)
CI01000340_10258762_10264352 NA coding downstream 64236 10258553 ~ 10265625 (-)
CI01000340_10117381_10122090 SYNPR coding downstream 207771 10116722 ~ 10122090 (-)
CI01000340_10051115_10063764 SLC6A13 coding downstream 265624 10050524 ~ 10064237 (-)
CI01000340_10025958_10028902 SRSF3 coding downstream 300272 10025656 ~ 10029589 (-)
CI01000340_10357202_10357606 NA coding upstream 16827 10356758 ~ 10359856 (-)
CI01000340_10468562_10470670 CAV3 coding upstream 128132 10468063 ~ 10472083 (-)
CI01000340_10473924_10477962 NA coding upstream 133938 10473869 ~ 10479040 (-)
CI01000340_10485958_10487241 NA coding upstream 145994 10485925 ~ 10487330 (-)
CI01000340_10497000_10501726 PARP3 coding upstream 156705 10496636 ~ 10502577 (-)
G492037 NA non-coding downstream 93584 10235847 ~ 10236277 (-)
G491908 NA non-coding downstream 107039 10137245 ~ 10222822 (-)
G492020 NA non-coding downstream 200601 10129060 ~ 10129260 (-)
G492017 NA non-coding downstream 204583 10125041 ~ 10125278 (-)
G492005 NA non-coding downstream 227452 10096672 ~ 10102409 (-)
G492047 NA non-coding upstream 10126 10350057 ~ 10353949 (-)
G492343 NA non-coding upstream 339387 10679318 ~ 10679596 (-)
G492364 NA non-coding upstream 412797 10752728 ~ 10752946 (-)
G492371 NA non-coding upstream 441452 10781383 ~ 10784905 (-)
G491712 NA other downstream 1530284 8799201 ~ 8799577 (-)
G489511 NA other downstream 4002489 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 4109219 6095704 ~ 6194501 (-)
CI01000340_05321995_05329778 ATG4C other downstream 5004717 5320753 ~ 5330215 (-)
G493109 NA other upstream 1333815 11673746 ~ 11677994 (-)
G493266 NA other upstream 1727246 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 2272285 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 3873417 14318365 ~ 14336258 (-)

Expression


Co-expression Network