G492139


Basic Information

Item Value
gene id G492139
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10478590 ~ 10478848 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU564513
CAAAAACAAATGAAGGGAGGTGCACAGAAAAAAAGAGTGAAGGACAGGGGAAATGAAAGGGCACTGCCTACGAAATGAGGAGTGCTGTGTCCTTGTTGTGCTGGGCCTGGGAGTGAAAGAAGCGTCTATGTTGAGTAGTAAAGGTCAGGCCATTTGAGGAGGCCTGAAGGTCAATGGTGGTATTGAACCTTGAGGAAAATCTACATGTGCATAATGATAGTTTTGAAGTGGTAGTGAAAAAAGTTTATTCATATGAAAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU564513 True 259 lncRNA 0.42 1 10478590 10478848

Neighbor

gene id symbol gene type direction distance location
CI01000340_10455853_10465771 OXTRL, OXTR coding upstream 12067 10455299 ~ 10466523 (+)
CI01000340_10388851_10395247 NA coding upstream 83323 10388629 ~ 10395267 (+)
CI01000340_10296583_10355505 SRGAP3 coding upstream 122490 10296583 ~ 10356100 (+)
CI01000340_10252718_10253859 NA coding upstream 224137 10252718 ~ 10254453 (+)
CI01000340_10227896_10249819 TWF2, WDR82P1, WDR82.L, WDR82.S, WDR82, SWD2 coding upstream 227822 10227896 ~ 10250768 (+)
CI01000340_10644426_10645811 GPX1, GPX1B coding downstream 165578 10644426 ~ 10645850 (+)
CI01000340_10731548_10747121 MST1RA coding downstream 251825 10730673 ~ 10747648 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV coding downstream 302620 10781468 ~ 10787792 (+)
CI01000340_10790372_10803993 NA coding downstream 311524 10790372 ~ 10804399 (+)
CI01000340_10869243_10869956 NA coding downstream 389389 10868237 ~ 10870398 (+)
G492137 NA non-coding upstream 926 10477457 ~ 10477664 (+)
G492136 NA non-coding upstream 2024 10476141 ~ 10476566 (+)
G492101 NA non-coding upstream 7666 10468200 ~ 10470924 (+)
G491108 NA non-coding upstream 359384 10116156 ~ 10119206 (+)
G490915 NA non-coding upstream 446265 10029238 ~ 10032325 (+)
G492142 NA non-coding downstream 3441 10482289 ~ 10482510 (+)
G492143 NA non-coding downstream 3790 10482638 ~ 10482969 (+)
G492144 NA non-coding downstream 4138 10482986 ~ 10483297 (+)
G492146 NA non-coding downstream 9105 10487953 ~ 10488356 (+)
G492147 NA non-coding downstream 9969 10488817 ~ 10489375 (+)
G490896 NA other upstream 633538 9831473 ~ 9845052 (+)
G490839 NA other upstream 1241031 9234973 ~ 9237559 (+)
G490826 NA other upstream 1347193 9125184 ~ 9131397 (+)
G490645 NA other upstream 1435489 9038812 ~ 9043101 (+)
G489634 NA other upstream 3777802 6694221 ~ 6700788 (+)
G492194 NA other downstream 172835 10651683 ~ 10652694 (+)
G492847 NA other downstream 1130258 11609106 ~ 11696961 (+)
G493617 NA other downstream 2576544 13055392 ~ 13069652 (+)
G493740 NA other downstream 3036379 13515227 ~ 13517111 (+)

Expression


Co-expression Network