Gene
RNA
| Item | Value |
|---|---|
| gene id | G492147 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 10488817 ~ 10489375 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU564521 | True | 559 | lncRNA | 0.44 | 1 | 10488817 | 10489375 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_10455853_10465771 | OXTRL, OXTR | coding | upstream | 22294 | 10455299 ~ 10466523 (+) |
| CI01000340_10388851_10395247 | NA | coding | upstream | 93550 | 10388629 ~ 10395267 (+) |
| CI01000340_10296583_10355505 | SRGAP3 | coding | upstream | 132717 | 10296583 ~ 10356100 (+) |
| CI01000340_10252718_10253859 | NA | coding | upstream | 234364 | 10252718 ~ 10254453 (+) |
| CI01000340_10227896_10249819 | TWF2, WDR82P1, WDR82.L, WDR82.S, WDR82, SWD2 | coding | upstream | 238049 | 10227896 ~ 10250768 (+) |
| CI01000340_10644426_10645811 | GPX1, GPX1B | coding | downstream | 155051 | 10644426 ~ 10645850 (+) |
| CI01000340_10731548_10747121 | MST1RA | coding | downstream | 241298 | 10730673 ~ 10747648 (+) |
| CI01000340_10781781_10785861 | CAMKVA, CAMKVB, CAMKV | coding | downstream | 292093 | 10781468 ~ 10787792 (+) |
| CI01000340_10790372_10803993 | NA | coding | downstream | 300997 | 10790372 ~ 10804399 (+) |
| CI01000340_10869243_10869956 | NA | coding | downstream | 378862 | 10868237 ~ 10870398 (+) |
| G492146 | NA | non-coding | upstream | 461 | 10487953 ~ 10488356 (+) |
| G492144 | NA | non-coding | upstream | 5520 | 10482986 ~ 10483297 (+) |
| G492143 | NA | non-coding | upstream | 5848 | 10482638 ~ 10482969 (+) |
| G492142 | NA | non-coding | upstream | 6307 | 10482289 ~ 10482510 (+) |
| G492139 | NA | non-coding | upstream | 9969 | 10478590 ~ 10478848 (+) |
| G492148 | NA | non-coding | downstream | 369 | 10489744 ~ 10489989 (+) |
| G492151 | NA | non-coding | downstream | 6193 | 10495568 ~ 10495795 (+) |
| G492121 | NA | non-coding | downstream | 9231 | 10498606 ~ 10499307 (+) |
| G492123 | NA | non-coding | downstream | 14815 | 10504190 ~ 10504527 (+) |
| G492162 | NA | non-coding | downstream | 48424 | 10537799 ~ 10538005 (+) |
| G490896 | NA | other | upstream | 643765 | 9831473 ~ 9845052 (+) |
| G490839 | NA | other | upstream | 1251258 | 9234973 ~ 9237559 (+) |
| G490826 | NA | other | upstream | 1357420 | 9125184 ~ 9131397 (+) |
| G490645 | NA | other | upstream | 1445716 | 9038812 ~ 9043101 (+) |
| G489634 | NA | other | upstream | 3788029 | 6694221 ~ 6700788 (+) |
| G492194 | NA | other | downstream | 162308 | 10651683 ~ 10652694 (+) |
| G492847 | NA | other | downstream | 1119731 | 11609106 ~ 11696961 (+) |
| G493617 | NA | other | downstream | 2566017 | 13055392 ~ 13069652 (+) |
| G493740 | NA | other | downstream | 3025852 | 13515227 ~ 13517111 (+) |
