G492551


Basic Information

Item Value
gene id G492551
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10915322 ~ 10916667 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU564960
AAACCATAAATCTACATTGAGCCAGTGTTTTGAGGGGTAAAACCTCAGTGGACCTCTGAGATTTGTCAGACTGCAGATGTTTGTTTAGAACAGTTGCACAGTAATATTTGATTTATTTTGGCATGCGTAAGTGAATTAATGCCGGAATACATGCTTCTTCTCCCCTCTGTCTTTGTTTATCTTTTGGTGGATTACATTAAGAGGCTTGAGGCTTATTATTCTTGTCTTAAGCCCCTTCAAGCTTGATGTGCCATAACCCTGACCCACATCACTTCACGGACAAAGACACGGGCAGTTATAAATGTACATGCATACTTGAAAAATGTTTTGAAATTATTTAATTGAGATATAGAGACTTTTATAAACTATCCGGTCAATTTTGTGTCCCCAGTTTATTTAGCACTACTTTGGTTTGAATTTCAGTAAGACAAATTTTGATTAGCTTATTTCTTGTATGTAAGCTTTAGATATTTAATATTCCTTTCATATCACAGCAAAGAAATTACATAAAACATAAAATGTAGTTCAGTCATTGCCTGTTTATTATGACGATTTAAATGGGAAGGCTATACAACGAATCTGCAATATACCATTTTCCAAATCTAGCAAATTAGCTGTTCTTCATGTTTGACTTGAACAATCATTTGAGTCCCCTCATGCGTTGTTACCTAGCAGCAGAAGTTTGACGGTCCTGGCATCTTTGTCGGCGTCCTCTTTCAGCTTCTTCTCTAGCTCCTTGGAGTGCTTCTCCTCTGCGCTCGCCCCGGCCCCCATACTGACTCTTGATTAGGAAAAAAGAAGTCCTTCTGGATAACCACTCGCTTGCACAGAGGCCTCCAGGTGCTGTCAACGATACAGCTCACACCACGACTGGATCTTGGTGACCTGGTGAATTGTTTCGAGTCTTAGAGGGATTTTGGGGATGTCTCTGACCACCTGGGTTGGTGGGGCCAATGAAGAACAAGGACAGAAGGCATTCAAAGCATGGAGAGGTCATCTAACCTCAGATTTAGGGAGAAGGTGCTGCGCTCAGCAAAAGGCGCTAAGCTGACCAGTGTCTTCACGAGCACATTAAAAAGGACTGTGTGAGTGGTGTAATGTGATATTATGAATGTTACAATTGTTTGTCATCAACCGATGCATGTTATGCTTTTCAAGAAAAGGCAGAAGAAGACTGAGAAGTAAATGGGTCTCGTGTTGCCTGCCATTGTGGTTTTCTCTCTCTATATTCTGATAAAAATATGCTTGATATCATGAAAGCAAATTGCATCTGTATGGCCTAAATTTTTGACTTTTCAAAATAGACAAAGATTTTTTTTTTTTTTAAATAAAATGACTGAATGTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU564960 True 1346 lncRNA 0.39 1 10915322 10916667

Neighbor

gene id symbol gene type direction distance location
CI01000340_10690474_10697545 IP6K2, IP6K2A coding downstream 215731 10689932 ~ 10699591 (-)
CI01000340_10667602_10671566 SC61A, SEC61A1.S, S61A1, SEC61A1L, SEC61A1 coding downstream 243756 10667532 ~ 10671566 (-)
CI01000340_10664417_10665925 EMC3, POB, EMC3.L coding downstream 249397 10664104 ~ 10665925 (-)
CI01000340_10648767_10660257 USP4 coding downstream 255065 10648548 ~ 10660257 (-)
CI01000340_10626938_10643520 FANCD2 coding downstream 271109 10626821 ~ 10644213 (-)
CI01000340_10924696_10934000 EDEM1 coding upstream 7717 10924384 ~ 10934000 (-)
CI01000340_10935675_10941448 ARL8B, ARL8BA, ARL8A coding upstream 18665 10935332 ~ 10941681 (-)
CI01000340_10951922_10954429 NA coding upstream 35167 10951834 ~ 10954436 (-)
CI01000340_10962027_10966453 NA coding upstream 45057 10961724 ~ 10967360 (-)
CI01000340_10980323_10984372 GLYCTK coding upstream 63419 10980086 ~ 10984372 (-)
G492400 NA non-coding downstream 54622 10860431 ~ 10860700 (-)
G492392 NA non-coding downstream 73652 10841453 ~ 10841670 (-)
G492385 NA non-coding downstream 88902 10826199 ~ 10826420 (-)
G492356 NA non-coding downstream 118053 10793259 ~ 10797269 (-)
G492381 NA non-coding downstream 127139 10787967 ~ 10788183 (-)
G492586 NA non-coding upstream 43146 10959813 ~ 10960064 (-)
G492600 NA non-coding upstream 108265 11024932 ~ 11025149 (-)
G492603 NA non-coding upstream 112797 11029464 ~ 11029680 (-)
G492619 NA non-coding upstream 141615 11058282 ~ 11058772 (-)
G492630 NA non-coding upstream 160969 11077636 ~ 11077841 (-)
CI01000340_10357202_10357606 NA other downstream 552918 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 887339 10025656 ~ 10029589 (-)
G491712 NA other downstream 2115745 8799201 ~ 8799577 (-)
G489511 NA other downstream 4587950 6320457 ~ 6327372 (-)
CI01000340_06095704_06194498 MAST2 other downstream 4694680 6095704 ~ 6194501 (-)
G493109 NA other upstream 757079 11673746 ~ 11677994 (-)
G493266 NA other upstream 1150510 12067177 ~ 12116900 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other upstream 1695549 12577435 ~ 12625758 (-)
CI01000340_14318434_14336130 NA other upstream 3296681 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 3630332 14546999 ~ 14552983 (-)

Expression


Co-expression Network