G492421


Basic Information

Item Value
gene id G492421
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 10987390 ~ 10988734 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU564829
CTCTATGTGTACACTCCCTTCGCATCCCCTTCGTCTCTCCCGTCCTCGTGGCAATCATACGCTCCGTTGTTTTATAAAGGGCTCAGATTTGGCTGCTGTGTAGGGTAGAATGTACCAAGCCATTGGACGTTTTCCATCAGGGATCACTTATTCACCTGAGGCCTGAGAGGAATGCAATCAGAGGATGATGGAACGACAACTGTACAGATATGATGGCAAAGAGTTGGCAGGTGACTTTCAGCGCATACTAAGAGAGACTGCGATTTATGAATACTCAGCAATAAGGAGCATAATTTGCATGACCAGAGGGTATCTGGCATCAGTACGGGGGACAAGCTTAACTCTCTGAGGTGGCTGAACTCTCACTTTCGGTAAGTGACTAAGATGAATCACTTTACTGTGTGCAATTAGATCTTCTCACTTTTTCATTAAAGCCAATATAGGGAATAATGGTAAATGGAGAAGATGGAAACAGAATTAGCAGGCCCGAATACTTTATCATATTTCGCTGCACATTCATCGCCGAGGTTTTTCCCCGATTGCACCATCACTCTTGTTATTCCATTAGAGCAAAAACAAAGAGAAATCACTCTTTCTCATAACCGTATTTGGCTCGTGAGTGGCCATCTTATTGCCTTTGTGCTTTAAATATCCTGCAACCTCTGGCTGTGATCTACATTCATATATTATGCAGAATATGCATGAAGCAAGGTTCTTTGATGCTTTGTATCTGGGGTTCAGATTGTGGAATACGTTCATTTGAATAACAGTCCATAAAGTCATATGCTCAACAAAATCATCATGATGCACTGAGGATTATGTAGAGATTTCACCATGACAAAGATAAAACAAATAAACCTTGGGGTGAGAGGGGGCACCATGCACCTATTTTAATAAATATTTTAATAAAACAAACAAAATTGCAACCGAACTTGACAGACAGAGATCATTACGCATTCCATTTGTTGTATGGAAAAGAGCTTTAATATTTTCTGTTTTATAGCTATTTTTTAATTTTGTGTTCCATGGAGAAAAAAGCTATAATTTTAAAGAACATGATAGTATGTTGATGATGACAGAATTTTCAGATGTAAAGTAAATGATCTGCAGAAAATGCAACTCAGTTAGACCTACCAAATTTAGACATCCCTGCAGTGTTTGGGAAAGTTACTTTTAAAAGTAATCCGTTACAATATTGCGCTACTCCCTAAAAAAGTAACTTATTGCACTTAGTTACTTTTCATGGAAAGTAATGTGTTACGTTACTTTTGCGTTACTTTTTCTCACTAGGGCTGCTTGTTTGTTTTTTTAATAAAAAAAAGTCCTGTTTTTGGCCCTTTGACAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU564829 True 1345 lncRNA 0.38 1 10987390 10988734

Neighbor

gene id symbol gene type direction distance location
CI01000340_10975991_10979709 TCTA coding upstream 7345 10975311 ~ 10980045 (+)
CI01000340_10915894_10921086 GNAT1, GNAT, GNAT1.S coding upstream 66190 10915764 ~ 10921200 (+)
CI01000340_10896398_10912573 SEMA3FA, SEMA3F coding upstream 74686 10896234 ~ 10912704 (+)
CI01000340_10882106_10884072 NA coding upstream 103192 10880971 ~ 10884198 (+)
CI01000340_10869243_10869956 NA coding upstream 116992 10868237 ~ 10870398 (+)
CI01000340_11013452_11016952 NA coding downstream 24203 11012937 ~ 11017219 (+)
CI01000340_11096711_11098581 ARL6IP5, ARL6IP5A coding downstream 107977 11096711 ~ 11099309 (+)
CI01000340_11177838_11181646 MITFA coding downstream 189104 11177838 ~ 11181914 (+)
CI01000340_11194496_11206585 NA coding downstream 205762 11194496 ~ 11206794 (+)
CI01000340_11497324_11498648 GPR27 coding downstream 508447 11497181 ~ 11498967 (+)
G492405 NA non-coding upstream 50758 10934850 ~ 10936632 (+)
G492420 NA non-coding upstream 55883 10930566 ~ 10931507 (+)
G492416 NA non-coding upstream 59889 10927109 ~ 10927501 (+)
G492402 NA non-coding upstream 123335 10863820 ~ 10864055 (+)
G492445 NA non-coding downstream 51021 11039755 ~ 11040102 (+)
G492502 NA non-coding downstream 139089 11127823 ~ 11129095 (+)
G492714 NA non-coding downstream 269322 11258056 ~ 11258257 (+)
G492684 NA non-coding downstream 291152 11279886 ~ 11283609 (+)
G492764 NA non-coding downstream 395985 11384719 ~ 11408312 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other upstream 199598 10781468 ~ 10787792 (+)
G492194 NA other upstream 334696 10651683 ~ 10652694 (+)
G490896 NA other upstream 1142338 9831473 ~ 9845052 (+)
G490839 NA other upstream 1749831 9234973 ~ 9237559 (+)
G490826 NA other upstream 1855993 9125184 ~ 9131397 (+)
G492847 NA other downstream 620372 11609106 ~ 11696961 (+)
G493617 NA other downstream 2066658 13055392 ~ 13069652 (+)
G493740 NA other downstream 2526493 13515227 ~ 13517111 (+)
G493782 NA other downstream 2833460 13822194 ~ 13923213 (+)
CI01000340_14100335_14108817 SLC16A1A other downstream 3108897 14099138 ~ 14108941 (+)

Expression


Co-expression Network