Gene
RNA
| Item | Value |
|---|---|
| gene id | G493196 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 12012855 ~ 12013244 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU565717 | True | 390 | lncRNA | 0.29 | 1 | 12012855 | 12013244 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_11903883_11956886 | CNTN3B | coding | downstream | 55969 | 11903780 ~ 11956886 (-) |
| CI01000340_11779096_11787055 | NA | coding | downstream | 224096 | 11779091 ~ 11788759 (-) |
| CI01000340_11695434_11705476 | PDZRN3B, PDZRN3 | coding | downstream | 307057 | 11694675 ~ 11705798 (-) |
| CI01000340_11679110_11679311 | NA | coding | downstream | 333544 | 11678836 ~ 11679311 (-) |
| CI01000340_11609366_11648905 | SHQ1 | coding | downstream | 363950 | 11609366 ~ 11648905 (-) |
| CI01000340_12515377_12519838 | NA | coding | upstream | 501502 | 12514746 ~ 12519980 (-) |
| CI01000340_12532321_12545278 | EPHA2A | coding | upstream | 518995 | 12532239 ~ 12545388 (-) |
| CI01000340_12562841_12563343 | NA | coding | upstream | 549349 | 12562593 ~ 12563343 (-) |
| CI01000340_12571142_12574655 | TARDBPL, TARDBP | coding | upstream | 557777 | 12571021 ~ 12574678 (-) |
| CI01000340_12577571_12625562 | PTPRG, PTPRGA, CA16B | coding | upstream | 564191 | 12577435 ~ 12625758 (-) |
| G493060 | NA | non-coding | downstream | 29157 | 11983063 ~ 11983698 (-) |
| G493157 | NA | non-coding | downstream | 131347 | 11881035 ~ 11881508 (-) |
| G493110 | NA | non-coding | downstream | 349916 | 11650721 ~ 11662939 (-) |
| G493075 | NA | non-coding | downstream | 481672 | 11530925 ~ 11531183 (-) |
| G493074 | NA | non-coding | downstream | 482288 | 11530233 ~ 11530567 (-) |
| G493267 | NA | non-coding | upstream | 9688 | 12022932 ~ 12086740 (-) |
| G493268 | NA | non-coding | upstream | 11252 | 12024496 ~ 12025256 (-) |
| G493266 | NA | non-coding | upstream | 92403 | 12067177 ~ 12116900 (-) |
| G493309 | NA | non-coding | upstream | 117390 | 12130634 ~ 12131075 (-) |
| G493311 | NA | non-coding | upstream | 119927 | 12133171 ~ 12134253 (-) |
| G493109 | NA | other | downstream | 334861 | 11673746 ~ 11677994 (-) |
| CI01000340_10357202_10357606 | NA | other | downstream | 1650451 | 10356758 ~ 10359856 (-) |
| CI01000340_10025958_10028902 | SRSF3 | other | downstream | 1984872 | 10025656 ~ 10029589 (-) |
| G491712 | NA | other | downstream | 3213278 | 8799201 ~ 8799577 (-) |
| G489511 | NA | other | downstream | 5685483 | 6320457 ~ 6327372 (-) |
| CI01000340_14318434_14336130 | NA | other | upstream | 2200104 | 14318365 ~ 14336258 (-) |
| CI01000340_14547725_14551493 | NA | other | upstream | 2533755 | 14546999 ~ 14552983 (-) |
| G494872 | NA | other | upstream | 2544379 | 14557623 ~ 14559023 (-) |
