G493266


Basic Information

Item Value
gene id G493266
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 12067177 ~ 12116900 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU565796
ATTTCATCAGCGTTCTTTGCCCTCTAGGTGTGTTGATATTCTCGTCACACATGTACTGCACTTTCGCTAGAGGGGGGTGGGTGTTTCCGTTTACAGGCATTGCATATTTGCAATGTAACAAGACCCTTACAGACAAAGAAAAGGTTAGAAAAAAAATAAGATGTGTCTTTCAAATTCTTCACCTACTTTGTATGCTCTCAAAGGTAAACATGCACAATGCTTTGACAGTGAGTGAAATGTCAATGGTATTGGCTTATTTGAATGCACACTCATCTCCACAGCTCAGACACAATGGAGGTTGTTCCTACTTACAATCCTCTCCTGAGTATCCCGTTATTATTTTGGGGTCCGGACCCCAGCCCGCGTGGTTCCTGGCCTGAATTTTGATCTCGTAAAGGACGAACGTCGGGGTGTTTTTAACCACAAACAAGTGCCTCTTCACCATGTGCTCCACCCAGTCCTCTCCGGTGCCTTGTCTTCTGTAGCTTACTTTGTACTCCAGACCAGGCCCGTTGTGTTCAATAGGTGACAATGGCTCCCAGTTGATATCCATTTCATGTGGCAAATGACCTTCGATCTTGATATTTTCTGGGTTCTTGTCGGGTGCTGATGCTGGAGTTTTGTATCTTTCAGTGGCCTGGCTTGGCAAACCTTTTCCGACCTCATTGATGGCAGAGACTCTAAAGCGGTAGTCCGCATGTCCGTGAAGCTTCAGCAAAACGGAGTGATGGTTTCCTGGTACTTTCGTCATCTCTCTCCATCTGCCCGGCTCATGTTGGCTTTCCTCGAACTCTATAACAAACTCAGTAATGGAGCTGTTATGGTCATCTCCTGGAATCCACTGCACTTTCACACTTCTGCCATTATGTTCAGACAGGATCACATCCTCTGGTGGATCAGGAACATCCACAACTGAAAGCTGCGCAACCGCCATGTCTTGGTCGACCGGTGTTCTGGCCACACAGACGTAGAAGCCCTGGTCTCCAAAGCTCACATTAATGATCTCAAGCACTCTATCGTCCAGGATATATCGTGCATTGTCGCTGCCGTTGAGGGTCATGCCATCTTTTTCCCAGAGGATCTCAAAGTCATCACCGAAGGAAGGATCGAACTCTGCCTGGCATGAAAACTGGATAGTGGTTCCAACTGAAACCCGCAAATCGCGTGGAGGGTTGACTATTCTGGTGGGATCTTTGACTTCAAGTGTCGCAGCAATGGCAACTTTGCCCTCGGTATTTTGAGCAAAACAAGAATACTCCCCCATGTCCTCTTTCATCACGTTGTGGATCTCCAGTGAACCATTCTTATGAACAGAAAACCTTTCTCCTTCCACTGTATTGGCACTGTCAGCTTTACTCCACGTAATACTGGCGATTGGCGAGCTGAAGACCTTACAGTGCATGACCACACCTTTCCCCTCCACTGCCATATATTGCAGATTATTTTCTGTTAAGATCAGGGGCTGGATGTTCATAATCATGATGTTGGCATTGGCTAGAATGGTGCCGTGTCTGTTTTTGGCCTCACACTGGTAAACAGCACTGTTTTCGGGGTTTGCGTTGTGGATGGAAATGGTGCCATCTTTCAAGATTTTCCTGTTGGATGCTGGGACCTCATTCAATGGTCGGCCGTTGACTCTCCATGCAACACTAGGTTGAGGATTTCCTTTCACGACACACTTGATCACCACATCAGATCCAATCGTCCCCAATTGGCTTTGAGGTTCAATCTCAAACTCAGGAGGCTCTTCTACTGTAACGTGAAAAGAATGCACAACCTCTCCATGGGGATTTTTGGCTTTGCACATATATTTCCCTTCGTCCTCCTCATTCACCATCTCTATGGTGAGCAACTTCCCATGACTCTCCACCACGGCCTTTTCGGGAAGCTTGTGGCCTATTTTAGCCCACTCCACCTTTGGTGTGGGAAATCCCTCTGCAATACACTCCAACTGAAGATCTTCGCCTTTCACCAGATATGTATGTGACTCCATTCCTGTGGGCGTCAGTAGACGGGGCTTCCTCTCCAAGAGAGAATTTGCATAACCTCTGCCGCTACCAGAGCCTGAGTCCTTCATTAACTTGTTGCTTTTGACCACGACAGACATGGCAGTTTTCTGAACGATGGTTCGTATGCGCGGGAAGGCAGCGAAGCAGCAGTAGTCTCTGCGGCTGTCAGTCTCAATGGCGTTTGAGAAGTACAGGTTCCCATTCAGACCCACTGATACTCTTTCATCCTGCTCAATGTGCTTTAGACCAATTGTCATCCAGTAGATTTGCAGTGGGGGGATTCCTTTAGGTGGGTTGCACTCCAGAATGACTGACTGACCTTCCATAACCTCAATCGGATCAATGATCTCTTTAGGGAACTTCGGAACATGGGAACAATGAATTCAATCTCTTTCGACATGGCTGTTCCTAACTTGTTGGTCGCAAAGCATTGATAATTGCCCTGGAATTCTGTGAGATTCCCATTATTGGGAATTATGAATGTTCCGGAATCATCTAATATTATCAGTCTGGGGTCCTGATCCGGATCAAAGTCTTGTCCATTCTTTGTCCACCTGAATTTTGGTCCAGGGTTTCCTGTGGCCTCACACTTCACAGGGAAGCTTTCTTCGAAAGGGAAGGCAACCAGAGAAGCAGGTGACTGCTCTGTAATTGTGGGAAGCTGTTTCATTCTTGTCCGCTCGTCCTCAGAAAGACAGTCAAACCCTTCCTCTTCTGCTCAGTCTAATCCCACAGGCGTGAAAAACAGAGAGTGCCGAGGAAATCCAGAGAAACGTCTACCACAGCTGACGCGGGAGAGAGCCCCACCACTAGCGCATTGAGCGGTGCGGCGCGAGAGAGGCACTGGGGGGACATATGTTGCCAAAGCCTCTCGTCTGGCAAAGAAGCTCATTAAACGAGT
>TU565794
TGGCTCTGAGAAACATAGGAATCATGTATTTGTGGCAGTTTTTCTATGATTAAGGGATGATACAAGACTTTTTCACCATCCAAATAGTTGTCGAAAGCAAAAATGCTACAAAAATCACATATTTTGTGAGCAAGTGATATGCTAGAGCAAAACAGTCACTGTTTTGGAATCAGCACCCTAAAGTTAGTAAAAAACAAGTACTGGATTTCATTCAGCAAATATGATGCAGGGAGGTGATATTCATTTGTTTGTTCTAAAACTTTGTGACTGACTTTCTTCAAACTTTTTCCATCTCATTTATCACTCCCAGAAGCAATTTATTATGTTTAGCTCAAGTGTTCACACATATCTTCTCCTCACTCACCTCCTTCAGGGGTTTTGAAGCTGACCGGATGACTTCCAGGCCCATTTCCTCTACTGTTAAAGGCCATGACAATGAGGCTGTATTCTGAGAAAGGCCTAAGCCCGGTGATTACCGCATGGTTCCTCTCGCCTGAGAATGTCGATGTGTGTTTGTCACCGTGTGTCTTCTTTGAATCCAACAGACTACGAAGCCTCCACAAGCTTACCCTGTAGCCCCCCAGATGTCCATTGAGTTTGTCCTTGTGAACATGCTCCCATCTGACCTTCACCATGGTGTTGTTCACTTCTACGGCTACATCCTCTGGAGCTGCTGAGGGGAAATCCTCTCCTGAGTATCCCGTTATTATTTTGGGGTCCGGACCCCAGCCCGCGTGGTTCCTGGCCTGAATTTTGATCTCGTAAAGGACGAACGTCGGGGTGTTTTTAACCACAAACAAGTGCCTCTTCACCATGTGCTCCACCCAGTCCTCTCCGGTGCCTTGTCTTCTGTAGCTTACTTTGTACTCCAGACCAGGCCCGTTGTGTTCAATAGGTGACAATGGCTGTGACAAGAGTACGAAAGAGCTCAGTTAGCTGACGGGAAACAGTAAATCAAAGGAAATAGCATTTAGT
>TU565795
AACATGTTCAGAAATGCTTTTAAAATAAAACATTATTATTCTCATACACGCAGTTGTGGTTAAATTAAACAGATTTTTCACTAACTGTATTTTCTTGATGTATGCTGATCATGTTTAAGTCTACTGTAGGCAGTTGTTTTCCATTGACACATAAAGATATCTCTCCTCACATCAGAGCAGTCATTTGTTTTCTTGACTGTTTTCTATTACTCTGCCGAATATTGGTATTATGCCTTGGGATTTTCATCTCGATCATATTTCTTCCATAAATACAACTTCCTATTTGAACCCTCAGTGAAATGGAAATAAACAGCACTTTATCAACAATCTGCTAACTGCCGATGATAAGTATGTCGCATTGAACCATTAATCATGATAAATGTGCTGTAAATTCACAGTTGTGTGGTTTTTCCATTTAATATATATATTTTTATGTTGATTACCAACTTATTTCTACGTCTGTAATAATAACAATCCAACATTTCCATTCCCAAAGGCAACATATTATTTCTTCTTCCTTTTTGCAGGCAAGCTTTTACCCTCAAATCAATAAGCGCTTGGTCTTCCAAGACAGTGATGAATGCAGCCCAGTCGCACACTGTTATGATATTGTTTAGCTATAAAGAAATGCTTAGATGGGCATATGAAAAGCTTGGTGAGATGGGAGGTCGAAATAATGTCCCCTGCATTCGCCGGGTCGATGCCCATAACAACAGCAACTTGGTCATCCATGTCAGAAAGCCAGATTCCCTGTCCTTTGGAATGCCACAGGCTGACTCCCCAGAGAAGACCCCACCCCTGAGCAGCTGCTGCCCCGTACTCACTTGCTTCAGGGACAGTGGTGCGCTCCTCGCTGGCAGCTGGTCCGCAGCCCACCTGCGTGCAACACCGTAGGTAAAACTTGTATTTGCTCAGTGCTTCCAGGTTCGGGAGGTGCAGCTTATTGCTGTCAGTAGAGATGTTGACGGTCATCAGAGGACCTAGTTCCTCTGTGTCATTTATTAGCTGATATTGGAGGATGTAGCCAATTAGGACTCCATTTGCGTCAACTGGAGGAGACCAGGTCAAGGTGACCTTGTGTTTCTGGATGTTTGAAACACTGAAAGCAGCTGCTTGACCAGGTACTCCTTCAGGGGTTTTGAAGCTGACCGGATGACTTCCAGGCCCATTTCCTCTACTGTTAAAGGCCATGACAATGAGGCTGTATTCTGAGAAAGGCCTAAGCCCGGTGATTACCGCATGGTTCCTCTCGCCTGAGAATGTCGATGTGTGTTTGTCACCGTGTGTCTTCTTTGAATCCAACAGACTACGAAGCCTCCACAAGCTTACCTAAAAGTACACAAGGTTAGATTAGTCCGTAGGTAGTGAAGGTACAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU565796 False 2910 TUCP 0.48 18 12067177 12106251
TU565794 False 975 lncRNA 0.44 3 12105647 12109609
TU565795 True 1377 TUCP 0.43 3 12108993 12116900

Neighbor

gene id symbol gene type direction distance location
CI01000340_11903883_11956886 CNTN3B coding downstream 148761 11903780 ~ 11956886 (-)
CI01000340_11779096_11787055 NA coding downstream 316888 11779091 ~ 11788759 (-)
CI01000340_11695434_11705476 PDZRN3B, PDZRN3 coding downstream 399849 11694675 ~ 11705798 (-)
CI01000340_11679110_11679311 NA coding downstream 426336 11678836 ~ 11679311 (-)
CI01000340_11609366_11648905 SHQ1 coding downstream 456742 11609366 ~ 11648905 (-)
CI01000340_12515377_12519838 NA coding upstream 405137 12514746 ~ 12519980 (-)
CI01000340_12532321_12545278 EPHA2A coding upstream 422630 12532239 ~ 12545388 (-)
CI01000340_12562841_12563343 NA coding upstream 452984 12562593 ~ 12563343 (-)
CI01000340_12571142_12574655 TARDBPL, TARDBP coding upstream 461412 12571021 ~ 12574678 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B coding upstream 467826 12577435 ~ 12625758 (-)
G493267 NA non-coding downstream 18907 12022932 ~ 12086740 (-)
G493268 NA non-coding downstream 80391 12024496 ~ 12025256 (-)
G493196 NA non-coding downstream 92403 12012855 ~ 12013244 (-)
G493060 NA non-coding downstream 121949 11983063 ~ 11983698 (-)
G493157 NA non-coding downstream 224139 11881035 ~ 11881508 (-)
G493309 NA non-coding upstream 21025 12130634 ~ 12131075 (-)
G493311 NA non-coding upstream 23562 12133171 ~ 12134253 (-)
G493315 NA non-coding upstream 36103 12145712 ~ 12145986 (-)
G493330 NA non-coding upstream 83862 12193471 ~ 12193797 (-)
G493402 NA non-coding upstream 204491 12314100 ~ 12314301 (-)
G493109 NA other downstream 427653 11673746 ~ 11677994 (-)
CI01000340_10357202_10357606 NA other downstream 1743243 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 2077664 10025656 ~ 10029589 (-)
G491712 NA other downstream 3306070 8799201 ~ 8799577 (-)
G489511 NA other downstream 5778275 6320457 ~ 6327372 (-)
CI01000340_14318434_14336130 NA other upstream 2103739 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 2437390 14546999 ~ 14552983 (-)
G494872 NA other upstream 2448014 14557623 ~ 14559023 (-)
G495475 NA other upstream 3497132 15606741 ~ 15612563 (-)
G493110 NA non-coding downstream 404238 11650721 ~ 11662939 (-)

Expression


Co-expression Network