G493311


Basic Information

Item Value
gene id G493311
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 12133171 ~ 12134253 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU565847
TTAAATCGTGGCTGTCATAACTGATTTATTCAAACATGCATTAAATATTGAAGAACATTATAATGAATATGTAACGGTGCATAGCTATATCAGAATGCTGCTTTCTAGAGTTCACTTTTCTAGCTGACTAATGAGTTTATGGTCACTGAATATGTTTTTCTGAGGTAAATGTGACGTTACGTGACATTGTGTCTTTCCGAGGTTGAAACACTGATTGAGCTATTACAAGAGACATGATATGGATTTCGGTAAGTTGTACTGTGTATTTTAACATACCTTCAGATGTTTAGTCGTGTTTATTTTGCCCTGTAACTGGTATTAAAGCGGAGTAGAGGATCAGTTCACGTGCGCTCCGTGCTGCCGCTTCTCTTTAACTGAGGCGCTAAAGCGATCTGTCACGTCACATTTAACAGCGTCAAAACGGTATTTATTTTTTGAATCTCATAATAAGATGGACGTCATTTGAAATCTGAGACTTTGCTTCATATCAAAAGTAACAAAGCACAAAGATCATTGCGATTTATTGGCTGGGAGGCGCACTACATGTTCTGTTCATTCATCAACTGAAAACAGACTAGACTAATCGATTCTTGGGATTTAAGAATCGATATCGGTTCGTAAAAATGAGAATCGATTAAAATCGAGAAATCGATATTTTTTACCCAGCCCTATTATGTACAGTATAAAACTACTACTATGCTAGCTAGCTACATGGGCTTCAGTGGTACAGTAAATAACACTGAACTTTTAGCCATATTAAATTTGAAGCTTTTGCTTTTATTTTAGCTATCACATTTTGAAGCAAAAGAAAATATGCATTGCTAAGCTTCAGCAAGTAATGAAGACAGAGACTGCAGAAATTCCAATCAATAGACTGTCTGTGTGAGCACTGCGCTGTGGCCCCATCTTCACTCAAGGTCTGTCTCTAGCTACATGCAAGAAATAGAAATTAATTAAATACACAAATATTTCAGCACCTCTAGGTCAGGCTGCCATCTAGACTCCTAATTGTAGCTGAAAACGAGATGGCTGTTGATTGGATGCTGCAGAAGCTTCATTTAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU565847 True 1063 lncRNA 0.37 2 12133171 12134253

Neighbor

gene id symbol gene type direction distance location
CI01000340_11903883_11956886 CNTN3B coding downstream 176285 11903780 ~ 11956886 (-)
CI01000340_11779096_11787055 NA coding downstream 344412 11779091 ~ 11788759 (-)
CI01000340_11695434_11705476 PDZRN3B, PDZRN3 coding downstream 427373 11694675 ~ 11705798 (-)
CI01000340_11679110_11679311 NA coding downstream 453860 11678836 ~ 11679311 (-)
CI01000340_11609366_11648905 SHQ1 coding downstream 484266 11609366 ~ 11648905 (-)
CI01000340_12515377_12519838 NA coding upstream 380493 12514746 ~ 12519980 (-)
CI01000340_12532321_12545278 EPHA2A coding upstream 397986 12532239 ~ 12545388 (-)
CI01000340_12562841_12563343 NA coding upstream 428340 12562593 ~ 12563343 (-)
CI01000340_12571142_12574655 TARDBPL, TARDBP coding upstream 436768 12571021 ~ 12574678 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B coding upstream 443182 12577435 ~ 12625758 (-)
G493309 NA non-coding downstream 2096 12130634 ~ 12131075 (-)
G493266 NA non-coding downstream 23562 12067177 ~ 12116900 (-)
G493267 NA non-coding downstream 46431 12022932 ~ 12086740 (-)
G493268 NA non-coding downstream 107915 12024496 ~ 12025256 (-)
G493196 NA non-coding downstream 119927 12012855 ~ 12013244 (-)
G493315 NA non-coding upstream 11459 12145712 ~ 12145986 (-)
G493330 NA non-coding upstream 59218 12193471 ~ 12193797 (-)
G493402 NA non-coding upstream 179847 12314100 ~ 12314301 (-)
G493403 NA non-coding upstream 180151 12314404 ~ 12314623 (-)
G493893 NA non-coding upstream 219875 12354128 ~ 12375232 (-)
G493109 NA other downstream 455177 11673746 ~ 11677994 (-)
CI01000340_10357202_10357606 NA other downstream 1770767 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 2105188 10025656 ~ 10029589 (-)
G491712 NA other downstream 3333594 8799201 ~ 8799577 (-)
CI01000340_14318434_14336130 NA other upstream 2079095 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 2412746 14546999 ~ 14552983 (-)
G494872 NA other upstream 2423370 14557623 ~ 14559023 (-)
G495475 NA other upstream 3472488 15606741 ~ 15612563 (-)

Expression


Co-expression Network