Gene
RNA
| Item | Value |
|---|---|
| gene id | G493942 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 12760227 ~ 12760573 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU566573 | True | 347 | lncRNA | 0.40 | 1 | 12760227 | 12760573 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_12577571_12625562 | PTPRG, PTPRGA, CA16B | coding | downstream | 134469 | 12577435 ~ 12625758 (-) |
| CI01000340_12571142_12574655 | TARDBPL, TARDBP | coding | downstream | 185549 | 12571021 ~ 12574678 (-) |
| CI01000340_12562841_12563343 | NA | coding | downstream | 196884 | 12562593 ~ 12563343 (-) |
| CI01000340_12532321_12545278 | EPHA2A | coding | downstream | 214839 | 12532239 ~ 12545388 (-) |
| CI01000340_12515377_12519838 | NA | coding | downstream | 240247 | 12514746 ~ 12519980 (-) |
| CI01000340_12771982_12782800 | CAMK1A | coding | upstream | 11000 | 12771573 ~ 12782800 (-) |
| CI01000340_12827332_12832015 | RDH20 | coding | upstream | 66709 | 12827282 ~ 12832626 (-) |
| CI01000340_12846755_12877559 | KCNB1 | coding | upstream | 85667 | 12846240 ~ 12878197 (-) |
| CI01000340_12881755_12891388 | PTGIS | coding | upstream | 121080 | 12881653 ~ 12891915 (-) |
| CI01000340_12969774_12974141 | TARBP2 | coding | upstream | 208382 | 12968955 ~ 12974141 (-) |
| G493987 | NA | non-coding | downstream | 46248 | 12713627 ~ 12713979 (-) |
| G493956 | NA | non-coding | downstream | 311205 | 12448791 ~ 12449022 (-) |
| G493955 | NA | non-coding | downstream | 313785 | 12446243 ~ 12446442 (-) |
| G493920 | NA | non-coding | downstream | 315510 | 12444516 ~ 12444717 (-) |
| G493919 | NA | non-coding | downstream | 316492 | 12443483 ~ 12443735 (-) |
| G493939 | NA | non-coding | upstream | 218 | 12760791 ~ 12812189 (-) |
| G494005 | NA | non-coding | upstream | 65093 | 12825666 ~ 12826157 (-) |
| G494014 | NA | non-coding | upstream | 141574 | 12902147 ~ 12902353 (-) |
| G494076 | NA | non-coding | upstream | 325539 | 13086112 ~ 13086361 (-) |
| G494096 | NA | non-coding | upstream | 724224 | 13484797 ~ 13485714 (-) |
| G493266 | NA | other | downstream | 643327 | 12067177 ~ 12116900 (-) |
| G493109 | NA | other | downstream | 1082233 | 11673746 ~ 11677994 (-) |
| CI01000340_10357202_10357606 | NA | other | downstream | 2397823 | 10356758 ~ 10359856 (-) |
| CI01000340_10025958_10028902 | SRSF3 | other | downstream | 2732244 | 10025656 ~ 10029589 (-) |
| CI01000340_14318434_14336130 | NA | other | upstream | 1452775 | 14318365 ~ 14336258 (-) |
| CI01000340_14547725_14551493 | NA | other | upstream | 1786426 | 14546999 ~ 14552983 (-) |
| G494872 | NA | other | upstream | 1797050 | 14557623 ~ 14559023 (-) |
| G495475 | NA | other | upstream | 2846168 | 15606741 ~ 15612563 (-) |
| CI01000340_16175837_16177624 | NA | other | upstream | 3411104 | 16171677 ~ 16178314 (-) |
