G493939


Basic Information

Item Value
gene id G493939
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 12760791 ~ 12812189 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU566570
TACACTTTATCCTTTTGAAATTGTTTATTGGTGAAATTAACCCAATTTTGTCATTTTTAATGCAACCGTGTTCAATAAGCAACGCAGTACCAAGCATTTATCACAGGCTTTTTCATATGTACACAATGAAAAAAATAACAAATTACATTATCGTTAAAATAAGAGGAACTCGACTTATTTTGCCTCTGTATAAAAAGAAAATATATTTATAAAATGCTACTGTGATTTTTTTTTTTTTTTTTTAACAGCTTTTGCCCATTTGAAGCCTTTGTATAGAGTGGTCACAGGCAGAGAACTTTGTGAGGATTGGTGATGCCATTGTTTGAGGTGATGTATTCAGCAATACAAAAACATCATAAACTCAACCAAAATTCATCTAAAGTAACAGTCAAAGCGACACATTTCAAATCCATCTCAGTAGTTATAAATTGCTTCATGAGTGACTTCATTCCAGTGCGTCATACGTACTTAAAGAGATGGCTAAAACCTTTATTTTTCACACACACACACACACACACACACACGCACACACACACACACACACACACACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU566570 True 551 lncRNA 0.33 2 12760791 12812189

Neighbor

gene id symbol gene type direction distance location
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B coding downstream 135033 12577435 ~ 12625758 (-)
CI01000340_12571142_12574655 TARDBPL, TARDBP coding downstream 186113 12571021 ~ 12574678 (-)
CI01000340_12562841_12563343 NA coding downstream 197448 12562593 ~ 12563343 (-)
CI01000340_12532321_12545278 EPHA2A coding downstream 215403 12532239 ~ 12545388 (-)
CI01000340_12515377_12519838 NA coding downstream 240811 12514746 ~ 12519980 (-)
CI01000340_12827332_12832015 RDH20 coding upstream 15093 12827282 ~ 12832626 (-)
CI01000340_12846755_12877559 KCNB1 coding upstream 34051 12846240 ~ 12878197 (-)
CI01000340_12881755_12891388 PTGIS coding upstream 69464 12881653 ~ 12891915 (-)
CI01000340_12969774_12974141 TARBP2 coding upstream 156766 12968955 ~ 12974141 (-)
CI01000340_12975913_12979472 NA coding upstream 163697 12975886 ~ 12979472 (-)
G493942 NA non-coding downstream 218 12760227 ~ 12760573 (-)
G493987 NA non-coding downstream 46812 12713627 ~ 12713979 (-)
G493956 NA non-coding downstream 311769 12448791 ~ 12449022 (-)
G493955 NA non-coding downstream 314349 12446243 ~ 12446442 (-)
G493920 NA non-coding downstream 316074 12444516 ~ 12444717 (-)
G494005 NA non-coding upstream 13477 12825666 ~ 12826157 (-)
G494014 NA non-coding upstream 89958 12902147 ~ 12902353 (-)
G494076 NA non-coding upstream 273923 13086112 ~ 13086361 (-)
G494096 NA non-coding upstream 672608 13484797 ~ 13485714 (-)
G494045 NA non-coding upstream 869085 13681274 ~ 13684384 (-)
G493266 NA other downstream 643891 12067177 ~ 12116900 (-)
G493109 NA other downstream 1082797 11673746 ~ 11677994 (-)
CI01000340_10357202_10357606 NA other downstream 2398387 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 2732808 10025656 ~ 10029589 (-)
CI01000340_14318434_14336130 NA other upstream 1401159 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 1734810 14546999 ~ 14552983 (-)
G494872 NA other upstream 1745434 14557623 ~ 14559023 (-)
G495475 NA other upstream 2794552 15606741 ~ 15612563 (-)
CI01000340_16175837_16177624 NA other upstream 3359488 16171677 ~ 16178314 (-)

Expression


Co-expression Network