G494005


Basic Information

Item Value
gene id G494005
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 12825666 ~ 12826157 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU566640
NNNNTTTACTTCTCGCGAGAGAGTCAACGCGATTCAAAACTCTTTTGCTGAAGAAAATGAAGAATTTAAACACATTTACACTAAAGAAGAAACTTGTCCATGAAAAAGGACAAATAAAAGAAATTATCTTGCTCTATCAGAGCAAGTGAAAATTGTCAAGTATTTATATAGTTTATTACATACAGCAATAGAGACTCAAACATGTAAGGTTATGTAGTCATTTTTAAAGAGTTATCTGTTGCTGGCTCTCTCACGAGAAGTGAATCAGAGTTTCTCTCTGTTGCAAGGCATGTGATTGGCTGTTCACCACTGATGTCACGCATTCATGTGCACACGCTCCACAAACTCAGGATCAAAGCCTGAGTTGACAGAGAAAGTTGATGATCAGCATCATGGTACCAACAAAGCCGGATTGGAGTGGTTTGGTTTTGTCAACTCGAAACTAATCCTATAACCCTGAGTTTGTTCAACTACCATCATGGTACAGGCCCC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU566640 True 492 lncRNA 0.38 1 12825666 12826157

Neighbor

gene id symbol gene type direction distance location
CI01000340_12771982_12782800 CAMK1A coding downstream 42866 12771573 ~ 12782800 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B coding downstream 199908 12577435 ~ 12625758 (-)
CI01000340_12571142_12574655 TARDBPL, TARDBP coding downstream 250988 12571021 ~ 12574678 (-)
CI01000340_12562841_12563343 NA coding downstream 262323 12562593 ~ 12563343 (-)
CI01000340_12532321_12545278 EPHA2A coding downstream 280278 12532239 ~ 12545388 (-)
CI01000340_12827332_12832015 RDH20 coding upstream 1125 12827282 ~ 12832626 (-)
CI01000340_12846755_12877559 KCNB1 coding upstream 20083 12846240 ~ 12878197 (-)
CI01000340_12881755_12891388 PTGIS coding upstream 55496 12881653 ~ 12891915 (-)
CI01000340_12969774_12974141 TARBP2 coding upstream 142798 12968955 ~ 12974141 (-)
CI01000340_12975913_12979472 NA coding upstream 149729 12975886 ~ 12979472 (-)
G493939 NA non-coding downstream 13477 12760791 ~ 12812189 (-)
G493942 NA non-coding downstream 65093 12760227 ~ 12760573 (-)
G493987 NA non-coding downstream 111687 12713627 ~ 12713979 (-)
G493956 NA non-coding downstream 376644 12448791 ~ 12449022 (-)
G493955 NA non-coding downstream 379224 12446243 ~ 12446442 (-)
G494014 NA non-coding upstream 75990 12902147 ~ 12902353 (-)
G494076 NA non-coding upstream 259955 13086112 ~ 13086361 (-)
G494096 NA non-coding upstream 658640 13484797 ~ 13485714 (-)
G494045 NA non-coding upstream 855117 13681274 ~ 13684384 (-)
G494203 NA non-coding upstream 1102236 13928393 ~ 13928654 (-)
G493266 NA other downstream 708766 12067177 ~ 12116900 (-)
G493109 NA other downstream 1147672 11673746 ~ 11677994 (-)
CI01000340_10357202_10357606 NA other downstream 2463262 10356758 ~ 10359856 (-)
CI01000340_10025958_10028902 SRSF3 other downstream 2797683 10025656 ~ 10029589 (-)
CI01000340_14318434_14336130 NA other upstream 1387191 14318365 ~ 14336258 (-)
CI01000340_14547725_14551493 NA other upstream 1720842 14546999 ~ 14552983 (-)
G494872 NA other upstream 1731466 14557623 ~ 14559023 (-)
G495475 NA other upstream 2780584 15606741 ~ 15612563 (-)
CI01000340_16175837_16177624 NA other upstream 3345520 16171677 ~ 16178314 (-)

Expression


Co-expression Network