G493617


Basic Information

Item Value
gene id G493617
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 13055392 ~ 13069652 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU566210
AGGGAACATACACAAAAGAAAAGAATAAATAAATGAATAAATTAAATACCATACAAGAATAATAAAACCCCCCGAACCTGAGCTAAGCTGAAGTAAAATCATTATCAAACAGGATTAGGAAAGCATGGCGTATTAAGCATCAGCCATCCAAGAAGCACAACACATAGAGTTTTAGGTTTTTGTGCTATTAAACACAATAAGACTATATGTAGTTTTACCACATGCATTTGATTCTACCATTTTTTGTCTAATAAGGACACGCAGTGCATTGCGTTTCCACAAGCCACATCTTTCTCCAAAAATATTCAATGCTGTTGTTCCACAAAGGGCCTAAAATCCAAAAAACAACATGATGATTTGCAAGATGTATGTTTTGACATCCTCCACTCGCCAATGGTTTTATTCTCTCACTGTGAGATTGGTAGAGCACTCTGCTCTTCCCAGCGGGTTCTCAGCGATGATTTTATACTCTCCCATGTCTTTGGGTCCAACCCTGAGAATGAGCAGGGAGCACACTCCACAGGTGTTAGTTATTAAGTAATTGGTGTTAGTGTTGAGGCTGACGTTGTCGCGGTACCAGGTGACGTGGGGTGTGGGGTCGCCCCTCACGGCACAGCTCATGTAGCACTCGTAGCCTTGTGGGGCTGTGTGGATTTTCAGGGGGACCATAAACCTCGGAGGCCTCTCTAAGTTGCAGGTCTTGGACTCCGGGATGTTCAGCTTGAATTTTTCTTTCTTGCATGTGATTAGCCATTTTGGTGACTCCGAATGTTCAGACAGGCCAATGTCATTTTTGGAGTACACACGGAACTGGTATTCTCTCCCTGGCATGATGTTACAGGCTGTGTAACGGTTGTTGAAGATACGGTCTGCTACAGTGTGCCAGGTCCTCTTGCTGGAGTCTCTCTTGGTCACCGTGTAATGCAGGCGATCATCGCGTTTCTCATCTGGGGATGGTTCCCAGGAAACTGTCACTGTGCCCGGAACATTCTCATCCAACTCTACGGGACCTGGGGGCTTTGGCTCATCTGTAACTCTAATCTCAACACTGAAGGTCTCTTGCCCCACAATGTTCTTGACTATGATGGTATAGATTCCTGAATCGGAACGCTCTGCAGATGGGATCAGGATCTGAGAGCCTCCCTCAGCATTGCTAATAGTGACACGTTTGGACACAGGGACACCATCTTTAAGCCAGATGACATCAGGCCAAGGGGAAGCCTCAAAGTTGACGTTGAGTCGTGCAGAATTTCCAGCTCTGACCACCATGAAACTCTTGATCTTAGTATCTGTGAATCTTGGTCTCACTGGAGGAGGCATAGCCAAAACGTAGTTGTCCAGCTCTTGTGGCTCTCCCTCTCCACCTTCATTGATGGCGATCACTCTAACCCAATACATGGCCAGTGATTTCATTCCCTTTACAGTGTAGGAGGTCATGATGATGGCATTTGAGTTGCATCGATCCCACTCTGGGTTCTCAGCAGGCCTGATATCAACAAAGTACCCCTTGGCCTCATCCTGAACCCCGGGGGTTTCCTTTGGTTTAGTCCAAGACAAGGACAAAGTAGTGTAGGAGGAGTCTGTCACTCTAAGGTCAATGACTTTACCAGGAGGTTTTTTTGGATCTCTTGCATACACAAATTCTGAGGGGTGACTTGGTTCACCAGCTCCAGATATGTTGATGGCAGAGACACGGAACTCGTACTCCATTCCTTCAACTACATCTTTTACAGCATATTTCTTTGCTTGAATTGGCTGCTCTGGTGGATTGACTTGGCTCCACAAGTTGCTGCCCTTCTTGCGTTTCTCTAAGTTATAACCCAAAATATTGGTTCCTCCAGTGGTGGTCGGGGGAGTCCATGTCAGGTTGATGCAGTTTTTGAAGGCACTGACTACTTTAGGAGCAGATGGCGGACCAGGATATGCTTTAGTGCCAGCCTGCACATCCTCTGTCTCCATCATTTCACTGGTGCCTTCTTCAGTCTGGGCTCTGATACGGTAGCAGTATCTCCTTCCATGGTCAACATCATTGTCTTTATAGTGGGCTTCACCTGGGATCTGGCCTAATTTTTTCCATGTGTTGCGTCCAATTTGGTTGCGTTCAAGTATGTAATTTTTAATAGGGCAACCACCATCGTCTTTTGGTGGTCTCCACTTGATCTCGATGCAGTTGGAAGATGCTTCAATGATCTCCAGAGGTCCAAGTGGGGGGGTAGGCTTATCTAAATGAAGTAAAAAGTTGAACTTTGGTATATGTTGAACAATATATGTTGAACAAAACGGTATACAAACTTGTTACTAATATGTGCTACATTATTATTAAAAATACAGCCTGTTTTAGTTCGCTTTTTTTACTTACCAAGCACAACTAAGTTAGAAATGGCTTCCACTGTGCCAAACTCATTTTTGATTTTGATTTTGATTTCCCCAGTGTCTTTACGCTGTAATTTGGTGAGAAGCAGACGGCTTTCACTCTCTGAAATCTCAATCTTGCAGTGAGAGTCTGGCATGAGCTCTTCACCATCTTTGTACCACTGAACTTTGCATGGCTCACGGCCAATAAATGGAATTTTAAAGGTGGCTTTCTGATTGTGTTTGACCACAGTCGGTTTTGCAAATACTTCAATTTCCTTGGCATTGAATCTTGGTGGATCTTCAACTGCAATCACACATTCGGTTTTACGCCCATCAGCCTCAAATCGATATTTTCCAGCAAATTCTTCTGATACTTTGGCAATTTTCAGTTTGTGAATGACTCCGTCTTTACTGATGGTTATACCCTCAGTGGCGTCGGTAATCTCGCTGCCATCTTTGGACCAGACACCCTTACATTCAGCACTGCTGAGTTTGCAGACTAGTTCAGCTGCCTCTCCCACAATAGCTTTGCACTCCTCCAGTTCCTTCGGCTCCTCCACCTTCTCCAGTACCAGTAGCTCCTGCAGCCCACACCGCTCCTACTGCCGCTGCAGCACTACCTCCAACTCCACCCCCAGCCTTCTGAAGCCTTGCTGCTGCAGCAGCTGCCTGTGCGGCCATTGCAGCAGCTGCCGCAGCGCCTGCTGCAGCAGATTGCTCAGCACTCAGGCCTTCACTTAAGGCCTTGAGTTCAGCCTGCTTCCTGGCCTCTTCCTCAGCTTCGGCTTTGGCTTTAGCTGCTGCAGCCCGTGCCGCTGCATCTGCTGCGGCTTTAGCTTCAGCCCCAGATATACCTTTGGCTTTAGCTGCAGCAAGAGCATCCTCTGCAGCTTTAGCAGCAGCTGCGGCCGCAGCAGCTGCAGCTGCCTCTGCAGCCGCTTTTGCTGCTTCGGCTTGAGCTGCAGCTTTGGCTTTGGCTTCTGCTTCTGCTGCCTCCCGTTCAGCCTGGAGTTTCTTAGCAGCCTCCAAAGCTTCTGCCATCTCTTTCTTGTTCCTCTCGGCCTGCTCAGCAGCAATCTTCTTCAATTCATCTCCGGCACCGCCTGCCTGAGTGGTTTTACGGGCTTTCTTCTTGCCCTTTGTTGCAGGATCTTTGTCAGCTGGTGTGGAAAC
>TU566211
AGGGAACATACACAAAAGAAAAGAATAAATAAATGAATAAATTAAATACCATACAAGAATAATAAAACCCCCCGAACCTGAGCTAAGCTGAAGTAAAATCATTATCAAACAGGATTAGGAAAGCATGGCGTATTAAGCATCAGCCATCCAAGAAGCACAACACATAGAGTTTTAGGTTTTTGTGCTATTAAACACAATAAGACTATATGTAGTTTTACCACATGCATTTGATTCTACCATTTTTTGTCTAATAAGGACACGCAGTGCATTGCGTTTCCACAAGCCACATCTTTCTCCAAAAATATTCAATGCTGTTGTTCCACAAAGGGCCTAAAATCCAAAAAACAACATGATGATTTGCAAGATGTATGTTTTGACATCCTCCACTCGCCAATGGTTTTATTCTCTCACTGTGAGATTGGTAGAGCACTCTGCTCTTCCCAGCGGGTTCTCAGCGATGATTTTATACTCTCCCATGTCTTTGGGTCCAACCCTGAGAATGAGCAGGGAGCACACTCCACAGGTGTTAGTTATTAAGTAATTGGTGTTAGTGTTGAGGCTGACGTTGTCGCGGTACCAGGTGACGTGGGGTGTGGGGTCGCCCCTCACGGCACAGCTCATGTAGCACTCGTAGCCTTGTGGGGCTGTGTGGATTTTCAGGGGGACCATAAACCTCGGAGGCCTCTCTAAGTTGCAGGTCTTGGACTCCGGGATGTTCAGCTTGAATTTTTCTTTCTTGCATGTGATTAGCCATTTTGGTGACTCCGAATGTTCAGACAGGCCAATGTCATTTTTGGAGTACACACGGAACTGGTATTCTCTCCCTGGCATGATGTTACAGGCTGTGTAACGGTTGTTGAAGATACGGTCTGCTACAGTGTGCCAGGTCCTCTTGCTGGAGTCTCTCTTGGTCACCGTGTAATGCAGGCGATCATCGCGTTTCTCATCTGGGGATGGTTCCCAGGAAACTGTCACTGTGCCCGGAACATTCTCATCCAACTCTACGGGACCTGGGGGCTTTGGCTCATCTGTAACTCTAATCTCAACACTGAAGGTCTCTTGCCCCACAATGTTCTTGACTATGATGGTATAGATTCCTGAATCGGAACGCTCTGCAGATGGGATCAGGATCTGAGAGCCTCCCTCAGCATTGCTAATAGTGACACGTTTGGACACAGGGACACCATCTTTAAGCCAGATGACATCAGGCCAAGGGGAAGCCTCAAAGTTGACGTTGAGTCGTGCAGAATTTCCAGCTCTGACCACCATGAAACTCTTGATCTTAGTATCTGTGAATCTTGGTCTCACTGGAGGAGGCATAGCCAAAACGTAGTTGTCCAGCTCTTGTGGCTCTCCCTCTCCACCTTCATTGATGGCGATCACTCTAACCCAATACATGGCCAGTGATTTCATTCCCTTTACAGTGTAGGAGGTCATGATGATGGCATTTGAGTTGCATCGATCCCACTCTGGGTTCTCAGCAGGCCTGATATCAACAAAGTACCCCTTGGCCTCATCCTGAACCCCGGGGGTTTCCTTTGGTTTAGTCCAAGACAAGGACAAAGTAGTGTAGGAGGAGTCTGTCACTCTAAGGTCAATGACTTTACCAGGAGGTTTTTTTGGATCTCTTGCATACACAAATTCTGAGGGGTGACTTGGTTCACCAGCTCCAGATATGTTGATGGCAGAGACACGGAACTCGTACTCCATTCCTTCAACTACATCTTTTACAGCATATTTCTTTGCTTGAATTGGCTGCTCTGGTGGATTGACTTGGCTCCACAAGTTGCTGCCCTTCTTGCGTTTCTCTAAGTTATAACCCAAAATATTGGTTCCTCCAGTGGTGGTCGGGGGAGTCCATGTCAGGTTGATGCAGTTTTTGAAGGCACTGACTACTTTAGGAGCAGATGGCGGACCAGGATATGCTTTAGTGCCAGCCTGCACATCCTCTGTCTCCATCATTTCACTGGTGCCTTCTTCAGTCTGGGCTCTGATACGGTAGCAGTATCTCCTTCCATGGTCAACATCATTGTCTTTATAGTGGGCTTCACCTGGGATCTGGCCTAATTTTTTCCATGTGTTGCGTCCAATTTGGTTGCGTTCAAGTATGTAATTTTTAATAGGGCAACCACCATCGTCTTTTGGTGGTCTCCACTTGATCTCGATGCAGTTGGAAGATGCTTCAATGATCTCCAGAGGTCCAAGTGGGGGGGTAGGCTTATCTAAATGAAGTAAAAAGTTGAACTTTGGTATATGTTGAACAATATATGTTGAACAAAACGGTATACAAACTTGTTACTAATATGTGCTACATTATTATTAAAAATACAGCCTGTTTTAGTTCGCTTTTTTTACTTACCAAGCACAACTAAGTTAGAAATGGCTTCCACTGTGCCAAACTCATTTTTGATTTTGATTTTGATTTCCCCAGTGTCTTTACGCTGTAATTTGGTGAGAAGCAGACGGCTTTCACTCTCTGAAATCTCAATCTTGCAGTGAGAGTCTGGCATGAGCTCTTCACCATCTTTGTACCACTGAACTTTGCATGGCTCACGGCCAATAAATGGAATTTTAAAGGTGGCTTTCTGATTGATCATGTGAGACTGAAGAATAAATGTATTTAAAATGTATTTTAATTTAATTGAAAACATTTTAAAGGGTAACAATATTTTACAATATTGCTGTTTTTCTTGTATTTTTGGTCAACCTCTGGTTGAAAGTTTGGCCTGCCCTATTTTCTGTAAGGACCAACCACTTTTGCAATGTTACATTACATTTTTTATAAAATAATAATCTATATAGTGTAGATATATTTTGTGTCTCCTTGTATATTTTCTTACCTGTGACAGTCTCCGGTACAAGAGGTCCTGCTCGCTGACGTTTTTTTCCATCTTCGTCACCTCCTCCCTCACCACCGCTTCCTCCAGAGCCATCAGCGCCACCGGCTCCTCCAGCCCCACCAGCAGCTCCAGCTCCTCCAGCGCCACCGGCTCCTCCAGCTCCATCAGCTCCTCCAGCCCCTCCGGCTCCTCCAGCTCTTCCAGCTCCTCCAGTTCCTTCGGCTCCTCCACCTTCTCCAGTACCAGTAGCTCCTGCAGCCCACACCGCTCCTACTGCCGCTGCAGCACTACCTCCAACTCCACCCCCAGCCTTCTGAAGCCTTGCTGCTGCAGCAGCTGCCTGTGCGGCCATTGCAGCAGCTGCCGCAGCGCCTGCTGCAGCAGATTGCTCAGCACTCAGGCCTTCACTTAAGGCCTTGAGTTCAGCCTGCTTCCTGGCCTCTTCCTCAGCTTCGGCTTTGGCTTTAGCTGCTGCAGCCCGTGCCGCTGCATCTGCTGCGGCTTTAGCTTCAGCCCCAGATATACCTTTGGCTTTAGCTGCAGCAAGAGCATCCTCTGCAGCTTTAGCAGCAGCTGCGGCCGCAGCAGCTGCAGCTGCCTCTGCAGCCGCTTTTGCTGCTTCGGCTTGAGCTGCAGCTTTGGCTTTGGCTTCTGCTTCTGCTGCCTCCCGTTCAGCCTGGAGTTTCTTAGCAGCCTCCAAAGCTTCTGCCATCTCTTTCTTGTTCCTCTCGGCCTGCTCAGCAGCAATCTTCTTCAATTCATCTCCGGCACCGCCTGCCTGAGTGGTTTTACGGGCTTTCTTCTTGCCCTTTGTTGCAGGATCTTTGTCAGCTGGTGTGGAAAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU566210 False 3528 lncRNA 0.47 12 13055392 13069652
TU566211 True 3684 TUCP 0.47 12 13055392 13069652

Neighbor

gene id symbol gene type direction distance location
CI01000340_12962117_12967700 NA coding upstream 87690 12962117 ~ 12967702 (+)
CI01000340_12941743_12947838 OXTRL, OXTR coding upstream 106797 12940993 ~ 12948595 (+)
CI01000340_12834855_12840685 NA coding upstream 213902 12834855 ~ 12841490 (+)
CI01000340_12814883_12824102 STAU1 coding upstream 230728 12814883 ~ 12824664 (+)
CI01000340_12799540_12811486 PBRM1L, PBRM1 coding upstream 243906 12799540 ~ 12811486 (+)
CI01000340_13297106_13322357 NA coding downstream 227343 13296995 ~ 13323081 (+)
CI01000340_13489016_13506783 PADI2 coding downstream 419364 13489016 ~ 13506792 (+)
CI01000340_13528384_13528575 NA coding downstream 458534 13528186 ~ 13528664 (+)
CI01000340_13606258_13614587 NA coding downstream 536381 13606033 ~ 13614643 (+)
CI01000340_13672163_13687895 PHC2B coding downstream 602511 13672163 ~ 13689009 (+)
G493610 NA non-coding upstream 50958 13004029 ~ 13004434 (+)
G493609 NA non-coding upstream 51947 13003176 ~ 13003445 (+)
G493608 NA non-coding upstream 54094 13001006 ~ 13001298 (+)
G493607 NA non-coding upstream 54471 13000553 ~ 13000921 (+)
G493606 NA non-coding upstream 55521 12999582 ~ 12999871 (+)
G493629 NA non-coding downstream 5241 13074893 ~ 13075135 (+)
G493761 NA non-coding downstream 405515 13475167 ~ 13478231 (+)
G493762 NA non-coding downstream 410930 13480582 ~ 13480872 (+)
G493767 NA non-coding downstream 415505 13485157 ~ 13485683 (+)
G492847 NA other upstream 1358431 11609106 ~ 11696961 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other upstream 2267600 10781468 ~ 10787792 (+)
G492194 NA other upstream 2402698 10651683 ~ 10652694 (+)
G490896 NA other upstream 3210340 9831473 ~ 9845052 (+)
G490839 NA other upstream 3817833 9234973 ~ 9237559 (+)
G493740 NA other downstream 445575 13515227 ~ 13517111 (+)
G493782 NA other downstream 752542 13822194 ~ 13923213 (+)
CI01000340_14100335_14108817 SLC16A1A other downstream 1027979 14099138 ~ 14108941 (+)
G494485 NA other downstream 1385984 14455636 ~ 14459355 (+)
G495013 NA other downstream 2052899 15113895 ~ 15175666 (+)

Expression


Co-expression Network