G494394


Basic Information

Item Value
gene id G494394
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 14066592 ~ 14066932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU567070
GTTCCACCACAAACTGTTCCTCATTATTGCAATGCGTCCACTTTTTGAGGATTTGCCTTCAGAACTGCCTTAATTTTTCATGGCATAGACTCAACAAGGTTCTGGAAACATTCCTCAGAGATTTTGGTCCATATTGACAGGATAGCATCACACAGTTGCTGCAAATTTGTCGGCTGCACATCCATGATGCTGATCTCCTGTTCCACCACATCCCAGAGGTGCTCTACTGGATTGAGATCTGGTGACTGTGGAGGCCATTTGAGTGTGGTGAACTCATTGTCATGTTCAAGAAACCAGTTTGAGATGATCTGAGTTTTGTGACATGGTGCGTTACCCTGCTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU567070 True 341 lncRNA 0.45 1 14066592 14066932

Neighbor

gene id symbol gene type direction distance location
CI01000340_13912851_13920851 FAM19A3 coding upstream 145414 13912851 ~ 13921178 (+)
CI01000340_13886303_13892790 NA coding upstream 173342 13885383 ~ 13893250 (+)
CI01000340_13760380_13772390 MOV10A coding upstream 294061 13760217 ~ 13772732 (+)
CI01000340_13716380_13723765 WNT2B, WNT2BA, WNT2BB coding upstream 342403 13716057 ~ 13724189 (+)
CI01000340_13704471_13709909 NA coding upstream 356524 13704471 ~ 13710068 (+)
CI01000340_14100335_14108817 SLC16A1A coding downstream 32206 14099138 ~ 14108941 (+)
CI01000340_14114751_14121172 SYCP1 coding downstream 47819 14114751 ~ 14121211 (+)
CI01000340_14134961_14138081 NA coding downstream 68029 14134961 ~ 14138497 (+)
CI01000340_14144418_14150380 SLC25A22 coding downstream 77486 14144418 ~ 14150380 (+)
CI01000340_14236756_14249366 KCNA1, KCNA3, KCNA3.S, KCNA3A coding downstream 169216 14236148 ~ 14250397 (+)
G494333 NA non-coding upstream 15869 14050490 ~ 14050723 (+)
G494316 NA non-coding upstream 29636 14036735 ~ 14036956 (+)
G494228 NA non-coding upstream 111029 13955339 ~ 13955563 (+)
G494219 NA non-coding upstream 117123 13949116 ~ 13949469 (+)
G494207 NA non-coding upstream 127452 13938776 ~ 13939140 (+)
G494398 NA non-coding downstream 3123 14070055 ~ 14070343 (+)
G494405 NA non-coding downstream 11292 14078224 ~ 14078460 (+)
G494414 NA non-coding downstream 23856 14090788 ~ 14091318 (+)
G494369 NA non-coding downstream 34506 14101438 ~ 14171442 (+)
G494340 NA non-coding downstream 251457 14318389 ~ 14327626 (+)
G493782 NA other upstream 143379 13822194 ~ 13923213 (+)
G493740 NA other upstream 549481 13515227 ~ 13517111 (+)
G493617 NA other upstream 996940 13055392 ~ 13069652 (+)
G492847 NA other upstream 2369631 11609106 ~ 11696961 (+)
CI01000340_10781781_10785861 CAMKVA, CAMKVB, CAMKV other upstream 3278800 10781468 ~ 10787792 (+)
G494485 NA other downstream 388704 14455636 ~ 14459355 (+)
G495013 NA other downstream 1055619 15113895 ~ 15175666 (+)
CI01000340_16696371_16696706 NA other downstream 2629393 16696325 ~ 16698476 (+)
CI01000340_16703813_16708047 NA other downstream 2640701 16703813 ~ 16708047 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) G110757 LOC103376870 non-coding CM030134.1 CM030134.1 10603095 ~ 10603733 (-)
tiger barb (Puntius tetrazona) G93736 NA non-coding NC_056711.1 CM032080.1 14248765 ~ 14249522 (+)