Gene
RNA
| Item | Value |
|---|---|
| gene id | G494861 |
| gene name | NA |
| gene type | non-coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000340 |
| NCBI id | null |
| chromosome length | 19571558 |
| location | 14747970 ~ 14749440 (-) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU567561 | True | 940 | lncRNA | 0.41 | 2 | 14747970 | 14749440 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000340_14576054_14589873 | RALY | coding | downstream | 157767 | 14575836 ~ 14590203 (-) |
| CI01000340_14547725_14551493 | NA | coding | downstream | 194987 | 14546999 ~ 14552983 (-) |
| CI01000340_14515689_14516087 | ATP5E | coding | downstream | 231444 | 14515341 ~ 14516739 (-) |
| CI01000340_14506530_14506877 | NA | coding | downstream | 241093 | 14506406 ~ 14506877 (-) |
| CI01000340_14467309_14496470 | GNAS.L, MGC68706, GNAS | coding | downstream | 251407 | 14466969 ~ 14496563 (-) |
| CI01000340_14823900_14824982 | NA | coding | upstream | 74331 | 14823771 ~ 14825387 (-) |
| CI01000340_14835497_14846831 | MTSS1 | coding | upstream | 85796 | 14835236 ~ 14846831 (-) |
| CI01000340_14872482_14891188 | NA | coding | upstream | 122640 | 14872080 ~ 14891618 (-) |
| CI01000340_14894726_14899916 | OSGN1 | coding | upstream | 144153 | 14893593 ~ 14899916 (-) |
| CI01000340_14910995_14919035 | PIGU | coding | upstream | 161159 | 14910599 ~ 14919357 (-) |
| G494867 | NA | non-coding | downstream | 2913 | 14743717 ~ 14745057 (-) |
| G494902 | NA | non-coding | downstream | 31396 | 14716291 ~ 14716574 (-) |
| G494869 | NA | non-coding | downstream | 183343 | 14562097 ~ 14564627 (-) |
| G494855 | NA | non-coding | downstream | 204451 | 14542418 ~ 14543519 (-) |
| G494854 | NA | non-coding | upstream | 5443 | 14754883 ~ 14756719 (-) |
| G494909 | NA | non-coding | upstream | 19564 | 14769004 ~ 14769214 (-) |
| G495450 | NA | non-coding | upstream | 544833 | 15294273 ~ 15295000 (-) |
| CI01000340_15418307_15418626 | BLCAP.S, GM3852, BC10, BLCAP | non-coding | upstream | 668332 | 15417772 ~ 15418667 (-) |
| G495459 | NA | non-coding | upstream | 676209 | 15425649 ~ 15430109 (-) |
| G494872 | NA | other | downstream | 188947 | 14557623 ~ 14559023 (-) |
| CI01000340_14318434_14336130 | NA | other | downstream | 427693 | 14318365 ~ 14336258 (-) |
| CI01000340_12577571_12625562 | PTPRG, PTPRGA, CA16B | other | downstream | 2074445 | 12577435 ~ 12625758 (-) |
| G493266 | NA | other | downstream | 2631070 | 12067177 ~ 12116900 (-) |
| G495475 | NA | other | upstream | 857301 | 15606741 ~ 15612563 (-) |
| CI01000340_16175837_16177624 | NA | other | upstream | 1422237 | 16171677 ~ 16178314 (-) |
| CI01000340_16515291_16518346 | TUSC2A, TUSC2 | other | upstream | 1765459 | 16514899 ~ 16518531 (-) |
| G496845 | NA | other | upstream | 2294283 | 17043723 ~ 17045688 (-) |
| G496853 | NA | other | upstream | 2428052 | 17177492 ~ 17242739 (-) |
