G495491


Basic Information

Item Value
gene id G495491
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 15721150 ~ 15722591 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU568289
TCTGGGCTTAAAGAAGTTTCCCGACTGATGATTACAACAGTTGTGGTGCTCATGTTGTAAATATGATCATTCTTACATGAATTGAAGGCAGCGTTAGTACTTTGTACCAGTACATAGTACTTTTAGAATTTGTTCTGTATATAAAACCTAGTGTATATATGAACCGTTGCTTCATAGGGCATTTTTGTACTCTTAATGTTTTCTATCCGCCACTTTAGCTGGCAAAGCAGATGGTGTTGATTTAAAAGTAGCCACACTGTCTGACACTAAGTATTACCCTTGGATAGCATCATTCAGGAGGTTACACGTGTAGTCTTCCAAACGTTCTCATGTGTTTATACTAAAATGTGATTCTTGTCACTTAAGACATGCATTTAGAGACTCTAAAATGCACTTTGGGTAATGTTGCAATTAGCTGCTTAACTACTATAAAGTACTGTATTACTTCAATGAAGCCTATAGTATAGACTCACTGCATCTCAGTGTGTCTCTGATGCAATAGAAGTTAATTGCAAGGAAAACATGATTTACATTATTATTTTATTAAAACAGGTAAGCTTTTCCATCTTTTGATATTTACTAATGTTAATGGAGCTAATTTCTGTGTAGAAGTGTTTGCGACAGCTTACACTGAATGCTTGATAGCGTTTGATCATTGTCACTTAATATGCATCTTTGACAAATCTATAGATACATTTTTAATCTACAAGCTTTTTTATCCAACAAGTAGGAGATACTGTGAATAGGTGAGCTTGAAAAGATGATGTTAAAGTTTCCTTGTAGACCTGATTCAGAATCAGCTCCGGTCACCAGACACCTTCATATAGAGAAGACGTGGCTGAGAAACCCGAGATCTAGAGTAAAGGTACAAAAGCTTGTAAAGTAGTGCCGATCCAAGGTCAGGTTTTACCTTTCATATCCACAACACGTAAACATAAATATGTGATTGATAGGGGCAGATCCCATTTTAATGTGTTTAAACATGATTACATATTACTGGTAAAGTGCTAACTTTTGCCACTCAAGCCAATACCTGCCGATCCACCTGCCGAGCACTAACTTGAAATGTAAGGCCTTGAACTTACTAGTGCATTCCTAGTAATGTAGTCAGTGCCTACAATAGTTTTTCATTATTTTTTGCTCACCTTTTTGTCTTGGTAGTGCCTTCCAGTGACTTGCTTTTTTTGTTTGCCTTTTTTATGTGTTGTTTGCATTTTATGTACATATGAAAATCAAATATTATAAAATGTGATCTATTAACATAACCGTGTTTGGGAGTTTTAGATGTGTAACATACTTTTACAACTGCAGATTTTTACATGTAATCTGTTACATGTGACTTGCATAACTTTTCCAACAGTGTTACCAAAGACTACCATAAATCAATAAAGTTTATGTTTCTCTTTTTTTCAAAGCAGATTTTGTAAGCGTAGTAACAAATA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU568289 True 1442 lncRNA 0.35 1 15721150 15722591

Neighbor

gene id symbol gene type direction distance location
CI01000340_15677629_15704765 MMP24 coding downstream 14470 15677590 ~ 15706680 (-)
CI01000340_15666594_15673044 IF6, EIF6.S, EIF6 coding downstream 48106 15666460 ~ 15673044 (-)
CI01000340_15614801_15623230 TOMM34 coding downstream 97694 15614727 ~ 15623456 (-)
CI01000340_15559928_15562340 NA coding downstream 158810 15559602 ~ 15562340 (-)
CI01000340_15549307_15555642 RIMS4 coding downstream 163371 15548475 ~ 15557779 (-)
CI01000340_15723386_15729584 FAM83C coding upstream 519 15723110 ~ 15729978 (-)
CI01000340_15741859_15763888 NA coding upstream 18766 15741357 ~ 15763888 (-)
CI01000340_15802368_15806754 GDF5 coding upstream 78302 15800893 ~ 15807394 (-)
CI01000340_15818649_15820582 NA coding upstream 95289 15817880 ~ 15820582 (-)
CI01000340_15843587_15847043 OSER1 coding upstream 120570 15843161 ~ 15847095 (-)
G495545 NA non-coding downstream 86413 15634516 ~ 15634737 (-)
G495485 NA non-coding downstream 97155 15613499 ~ 15623995 (-)
G495475 NA non-coding downstream 110650 15606741 ~ 15612563 (-)
G495539 NA non-coding downstream 133707 15587153 ~ 15587443 (-)
G495538 NA non-coding downstream 135342 15585519 ~ 15585808 (-)
G495581 NA non-coding upstream 131097 15853688 ~ 15853903 (-)
G495582 NA non-coding upstream 133051 15855642 ~ 15857831 (-)
G495587 NA non-coding upstream 136368 15858959 ~ 15859189 (-)
G495588 NA non-coding upstream 136804 15859395 ~ 15859739 (-)
G495597 NA non-coding upstream 157714 15880305 ~ 15880509 (-)
G494872 NA other downstream 1162127 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 1165982 14546999 ~ 14552983 (-)
CI01000340_14318434_14336130 NA other downstream 1400873 14318365 ~ 14336258 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 3047625 12577435 ~ 12625758 (-)
CI01000340_16175837_16177624 NA other upstream 449086 16171677 ~ 16178314 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other upstream 792308 16514899 ~ 16518531 (-)
G496845 NA other upstream 1321132 17043723 ~ 17045688 (-)
G496853 NA other upstream 1454901 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 2696727 18419058 ~ 18421201 (-)

Expression


Co-expression Network