G495642


Basic Information

Item Value
gene id G495642
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16096190 ~ 16097201 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU568456
CTGCATCTACTTCAGGTCCAGGTCACTAATGATAAAAGACATGATATAACAGTTGTGGTGCAAAACATCTGTTAGCTACTGTATATTTGACAGCACAGAACCTAGAGACCAACTATTTACCTTAGTTTACATGTCAGTAAGCCTACTAGTTCTTCTAGCAGAAAGATGATCAGTTGATAATACCTAGAATATCAAAATCAACAGCAGGCGGTAGATCCTTTTTTCTGTTTAGCACCCAAACTCTGGAACAATCTTCCTAGCCTTGTTCGGGAAGCAGACACACTCTGTCAGTTTAAATCTAGACTAAAACACATCTCTTTAGCCTGGCATACACATAAGACATTATTACATTAATTCATATCCATTAAAGGATTGTTAGGCTGCATAAATTAGGTCAACAGGAACCGGGAACACTTCCCATAACACCCAATGTACTTGTTACATCGTAAGAAGAATGGCATCTGCACCAGTCTCTCTGTTTATCCCGAGGTTTCTGTAGTCAGTCGTATCCGGTCTATATCCAGATGGTGGACCTGCAGCTAGACACGACCACAATGCAGCCCTGAATGTCAGCAGATATCCTATCAACTAGACAATCCCCTGTGAAGGACTCGTCGACACAACAGCCATCGGCACTGATCCTCAGCATAGACCACAAGAACCAGACAAATCCTCTGCACAGACCTATGACTAGCTTCATCTCCATACTGGTGTGATGAATCCAATCTTCAAGCAAAAGGAACTGGATGAAATATTTGAATGCTACCGATTCACAACCTGATTTCTGACTTGTGATGCAACCTGAATCATAATCTCACTGTGTTCATTCGTTGACCAGAGGAGAACTGCCCCCAACGACTGAGCCTGGTTTCTTCCAAGGTTTTGTTCTCCATTCTGTCACCTGCCACTGTCGCCTCTGGCTTGCTTTAGTTGGGGACACTTAATATTCAAAAATATTATTGATTTGACTGCACTGACACTATTGGATGAAAAAACTGAACTGAGCTGGACG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU568456 True 1012 lncRNA 0.42 1 16096190 16097201

Neighbor

gene id symbol gene type direction distance location
CI01000340_16061769_16080354 SLC38A3B, SLC38A3 coding downstream 15836 16061507 ~ 16080354 (-)
CI01000340_16053984_16057786 GNAI1 coding downstream 37289 16053910 ~ 16058901 (-)
CI01000340_16006372_16024582 GNAI2 coding downstream 71486 16006340 ~ 16027056 (-)
CI01000340_16001904_16003536 FAM212AB coding downstream 92654 16001834 ~ 16003536 (-)
CI01000340_15863675_15876969 RBPJL coding downstream 219221 15863670 ~ 15876969 (-)
CI01000340_16101493_16104784 NA coding upstream 2713 16099914 ~ 16104935 (-)
CI01000340_16108047_16115989 RBM5 coding upstream 10586 16107787 ~ 16115989 (-)
CI01000340_16117666_16121565 NA coding upstream 20157 16117358 ~ 16122021 (-)
CI01000340_16139895_16145747 NA coding upstream 42694 16139895 ~ 16146211 (-)
CI01000340_16175837_16177624 NA coding upstream 77256 16171677 ~ 16178314 (-)
G495630 NA non-coding downstream 80055 16014324 ~ 16016135 (-)
G495622 NA non-coding downstream 116960 15969969 ~ 15979230 (-)
G495615 NA non-coding downstream 166812 15925410 ~ 15929378 (-)
G495603 NA non-coding downstream 176899 15918867 ~ 15919291 (-)
G495668 NA non-coding upstream 188725 16285926 ~ 16286334 (-)
G495682 NA non-coding upstream 214005 16311206 ~ 16315130 (-)
G496641 NA non-coding upstream 362440 16459641 ~ 16459909 (-)
G496651 NA non-coding upstream 428345 16525546 ~ 16527155 (-)
G496658 NA non-coding upstream 481741 16578942 ~ 16579856 (-)
G495475 NA other downstream 483627 15606741 ~ 15612563 (-)
G494872 NA other downstream 1537167 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 1541022 14546999 ~ 14552983 (-)
CI01000340_14318434_14336130 NA other downstream 1775913 14318365 ~ 14336258 (-)
CI01000340_12577571_12625562 PTPRG, PTPRGA, CA16B other downstream 3422665 12577435 ~ 12625758 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other upstream 417698 16514899 ~ 16518531 (-)
G496845 NA other upstream 946522 17043723 ~ 17045688 (-)
G496853 NA other upstream 1080291 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 2322117 18419058 ~ 18421201 (-)

Expression


Co-expression Network