G496651


Basic Information

Item Value
gene id G496651
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16525546 ~ 16527155 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU569633
TGCTACACGGACGATCATTGCAGAATAAAGGGTATTTCTACTATTGACATTGTCTTGGGCTTTTGCTGTCTTTTCATGACACCGTAATACCTGAGGTGAATATTTCAGAATTCTGAAGTTATGAGGACTTAAATGCAGAAAATACAATCCTAAAGTGTTTAAGGAGGATTAATATGGGCCATGATTTAGATTGCACATATATGTATCTCACTCAAGATACCAAGGGAATGTGTAAATTAAGCTTTTTGGTGCCCTGAAAAGTAGTACATTTGAATCCTTGAGAACCATAGCTTATTGTCACTGTTGTGATCTGTCATGTACACAGCCAGATGATTAAAATAAATCATAAGTATTCCATAAGCACTTGGGTGTGGAAAACCTTGAGCTGATCCCTGTAAGTCCTTTAAGGAATGATGCTGCAAAAAATAAAGTGGGTTGTGTATTTTACATATTGTTGGCAATATTAATACATCTCAATGTTCGATTTTTAAAGGATTAGTTCACTTCAGAATTAAAATTTCCTGATAATTTACTTTTTAGTACCTTGAGTCACCACTTGATGGTGTCCTGAAACATAACCACCTGAGAACCACTTCTATAAGCAAAGTGTTTTAGGGAATTATTTTGTTTGATGTGTAATTTCTTTCTTTACCATTAAGTTTTTATCCTTTTTAACCATTTAAGAAGTGCCAAATAAGGGATTAGTACAATAAATGTCATCATGTAGGTCCAAAACACAAATCTTTTTAGCTGGAATGTCATTTAGCACAGTAATACACCAGCAAAGACGTCTGTTTTCTGCGAATCAGTTTCAAAGTGCGATTTGTACTCGCAAGATCGGTGTCAGTGATGGCTTCTTAAATTGACCAATGCTTCCATAAACTTCTATAGTGACAAATAAATACAGACAAATGCAGAAATATACATCCAAATACAAACCTTTGTTATTATCCTCAATGCTGATTCCTGGGGATTCTAGTGGAAAACATCACATTATAAGCTAAAATAATGTGCTTCCTCAACACCTGGCCTGGGTAACTCATATTTGATTACAAAATATAAGAACCAGCCTTGAAACAAATGTTCACTGGAATATACACTAACAAAAAGCTAGGTAAGCTGTAAACGGCTACATTCAGAATGAATGCATCTATGAGAACTATCAAGCACATGATGTTACACAGTTAAATTATAGTTTGATCTAAATCTAGTCTACAACTTG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU569633 True 1222 lncRNA 0.34 2 16525546 16527155

Neighbor

gene id symbol gene type direction distance location
CI01000340_16515291_16518346 TUSC2A, TUSC2 coding downstream 7015 16514899 ~ 16518531 (-)
CI01000340_16502291_16507977 HYAL2, HYAL2A coding downstream 15598 16501927 ~ 16509948 (-)
CI01000340_16492560_16496822 NA coding downstream 27584 16492141 ~ 16497962 (-)
CI01000340_16408042_16409453 NA coding downstream 112610 16407985 ~ 16412936 (-)
CI01000340_16353966_16364847 NA coding downstream 160650 16353816 ~ 16364896 (-)
CI01000340_16540718_16544143 RPS10, RPS10-NUDT3, RPS10.L coding upstream 13563 16540718 ~ 16544143 (-)
CI01000340_16584213_16590736 SPDEF coding upstream 56826 16583981 ~ 16592930 (-)
CI01000340_16616356_16625161 C20H6ORF106, C26H6ORF106, C11H6ORF106, CLG3H6ORF106, CLG2H6ORF106, C23H6ORF106, CUNH6ORF106, C4H6ORF106 coding upstream 88400 16615555 ~ 16625161 (-)
CI01000340_16656861_16660297 NA coding upstream 129353 16656508 ~ 16660297 (-)
CI01000340_16661934_16665857 SYS1 coding upstream 134378 16661533 ~ 16666655 (-)
G496641 NA non-coding downstream 65637 16459641 ~ 16459909 (-)
G495682 NA non-coding downstream 210416 16311206 ~ 16315130 (-)
G495668 NA non-coding downstream 239212 16285926 ~ 16286334 (-)
G495642 NA non-coding downstream 428345 16096190 ~ 16097201 (-)
G495630 NA non-coding downstream 509411 16014324 ~ 16016135 (-)
G496658 NA non-coding upstream 51787 16578942 ~ 16579856 (-)
G496659 NA non-coding upstream 52958 16580113 ~ 16580492 (-)
G496685 NA non-coding upstream 115469 16642624 ~ 16643141 (-)
G496698 NA non-coding upstream 167984 16695139 ~ 16695401 (-)
G496699 NA non-coding upstream 179573 16706728 ~ 16707060 (-)
CI01000340_16175837_16177624 NA other downstream 345461 16171677 ~ 16178314 (-)
G495475 NA other downstream 912983 15606741 ~ 15612563 (-)
G494872 NA other downstream 1966523 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 1970378 14546999 ~ 14552983 (-)
G496845 NA other upstream 516568 17043723 ~ 17045688 (-)
G496853 NA other upstream 650337 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 1892163 18419058 ~ 18421201 (-)
G497442 NA other upstream 2631714 19158869 ~ 19166778 (-)

Expression


Co-expression Network