G496713


Basic Information

Item Value
gene id G496713
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16778526 ~ 16779484 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU569708
ATTTTAATAAGATTTAATTTAATTTCAACAAGTTTAAGTCTCGGCTAGCCTGCTTACAAAATAATCTGCACAAAAAAACATTTCAGTCGAGCGCTTATACGCAGTACTATGTTGTGTCATCTCAAGATTTTACAAGTGAAAACTGAGTATTGGTGACAGACATATGGAGTCTGGATGCAAGGAAAGGAAGGTTGAGAAAACAGTGAGCCTCAGGAAAGCCAACAGGCAAAGATATCAGCCAATCATGCACTTTCAGCCTCTACGACATTCAGCAGCGCCAAACACAAAGCACTATGCTACTTAACACAGGTTGAGCTTCCGTAGCACTTCTAACTTTGTTTTTGTTTTTTTTGCCAAATACTGATGCAAACACTCATTCCTCAGGATTTTATTCAGCCAATATATTCCTGGAACTTATAGCGGTCTCTCATTGGTTTGTGCAAAGGCAAATGCCATTAAGCCCCACCCCACCCGCAGGAAAGCGCATACCTTCAGCTTTGACTGTATCTCGCGAGATTTTCTCCGGGCAAGAACCTGCAAATGGCTAGAAACCTGTTTTCGTGTGCGGGTTTTGCCTGTTCTCAGCTTGATG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU569708 True 592 lncRNA 0.42 2 16778526 16779484

Neighbor

gene id symbol gene type direction distance location
CI01000340_16689196_16692384 NA coding downstream 85191 16689169 ~ 16693335 (-)
CI01000340_16672630_16676596 NA coding downstream 101904 16672555 ~ 16676622 (-)
CI01000340_16661934_16665857 SYS1 coding downstream 111871 16661533 ~ 16666655 (-)
CI01000340_16656861_16660297 NA coding downstream 118229 16656508 ~ 16660297 (-)
CI01000340_16616356_16625161 C20H6ORF106, C26H6ORF106, C11H6ORF106, CLG3H6ORF106, CLG2H6ORF106, C23H6ORF106, CUNH6ORF106, C4H6ORF106 coding downstream 153365 16615555 ~ 16625161 (-)
CI01000340_16835641_16841074 NA coding upstream 55766 16835250 ~ 16841074 (-)
CI01000340_16851655_16855749 TNNI1A, TNNI1B, TNNI1 coding upstream 71927 16851411 ~ 16855749 (-)
CI01000340_16864476_16870042 CSRP1, CSRP1A, CSRP1B coding upstream 84992 16864476 ~ 16870042 (-)
CI01000340_17053954_17065047 NA coding upstream 272893 17052377 ~ 17065047 (-)
CI01000340_17078619_17088012 UBE2C coding upstream 299135 17078619 ~ 17088012 (-)
G496735 NA non-coding downstream 796 16769114 ~ 16777730 (-)
G496705 NA non-coding downstream 45713 16732585 ~ 16732813 (-)
G496701 NA non-coding downstream 50998 16727303 ~ 16727528 (-)
G496671 NA non-coding downstream 66159 16711516 ~ 16712367 (-)
G496699 NA non-coding downstream 71466 16706728 ~ 16707060 (-)
G496744 NA non-coding upstream 33247 16812731 ~ 16812950 (-)
G496745 NA non-coding upstream 34294 16813778 ~ 16814076 (-)
G496784 NA non-coding upstream 114535 16894019 ~ 16894238 (-)
G496797 NA non-coding upstream 148907 16928391 ~ 16966305 (-)
G496808 NA non-coding upstream 174282 16953766 ~ 16954687 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 258552 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 598441 16171677 ~ 16178314 (-)
G495475 NA other downstream 1165963 15606741 ~ 15612563 (-)
G494872 NA other downstream 2219503 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 2223358 14546999 ~ 14552983 (-)
G496845 NA other upstream 264239 17043723 ~ 17045688 (-)
G496853 NA other upstream 398008 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 1639834 18419058 ~ 18421201 (-)
G497442 NA other upstream 2379385 19158869 ~ 19166778 (-)

Expression


Co-expression Network