G496808


Basic Information

Item Value
gene id G496808
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 16953766 ~ 16954687 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU569826
GAGACGCCCAATGAGCCGAGCCCAGAGGACTGGGAGGTGGAGCTTGGTGGTCTGGAGGAGGGGCCACCCGTCTTCAGCTGGTCATTCTCTGCCTTCAGGTTTTCTACTGTAAGCTGCATGTTGGTCATGGCCTCCTGCAGCTGCTCCAGCTGATGGGCGGAGCTAAGTGCCTCCAAACGGATGTCCGTCAGCTTGCGCTCTTTCTCCCATAGTTCCGTGCGTAACTCTGACACCACTTTCTCATCATGCTCAGTCTCCTCATGCCCTTCACACGATCCTGATGTTGAAGTTGAGGCCTTTGCAGGGACATTATCCACATTATGGATGATTTTGGGTGAAGATGGGGCGGATGTGACCGGGGTTGCGATCTCCTCTATATCTGCGTATGGCGCTTTGGAACCCTTTTTACTGAAGGCCTTGTTAAAGGAGCTCCTCAGCTACATTTAGAGGAGAAATCAGAGTTTAACAACAGCAGCTCATTTATATTGAGTCTCTCTTTAAAAACAAACAAAGTGTTAGTGTAGATGGTTTGGATTCATGACGGTAGCAAATAGCAAAACAAAAATAACAGTGGAGGCATGTAAGATTTGAAGTGTGATCGCGTCTGCA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU569826 True 609 lncRNA 0.49 3 16953766 16954687

Neighbor

gene id symbol gene type direction distance location
CI01000340_16864476_16870042 CSRP1, CSRP1A, CSRP1B coding downstream 83724 16864476 ~ 16870042 (-)
CI01000340_16851655_16855749 TNNI1A, TNNI1B, TNNI1 coding downstream 98017 16851411 ~ 16855749 (-)
CI01000340_16835641_16841074 NA coding downstream 112692 16835250 ~ 16841074 (-)
CI01000340_16689196_16692384 NA coding downstream 260431 16689169 ~ 16693335 (-)
CI01000340_16672630_16676596 NA coding downstream 277144 16672555 ~ 16676622 (-)
CI01000340_17053954_17065047 NA coding upstream 97690 17052377 ~ 17065047 (-)
CI01000340_17078619_17088012 UBE2C coding upstream 123932 17078619 ~ 17088012 (-)
CI01000340_17094196_17104831 PCIF1 coding upstream 139029 17093716 ~ 17106787 (-)
CI01000340_17122774_17130168 CTSA coding upstream 167709 17122396 ~ 17130168 (-)
CI01000340_17146962_17186247 NA coding upstream 191758 17146445 ~ 17186492 (-)
G496784 NA non-coding downstream 59528 16894019 ~ 16894238 (-)
G496745 NA non-coding downstream 139690 16813778 ~ 16814076 (-)
G496744 NA non-coding downstream 140816 16812731 ~ 16812950 (-)
G496713 NA non-coding downstream 174282 16778526 ~ 16779484 (-)
G496735 NA non-coding downstream 176036 16769114 ~ 16777730 (-)
G496825 NA non-coding upstream 3281 16957968 ~ 16958541 (-)
G496801 NA non-coding upstream 13669 16968356 ~ 16986534 (-)
G496827 NA non-coding upstream 16130 16970817 ~ 16971168 (-)
G496829 NA non-coding upstream 38399 16993086 ~ 16993319 (-)
G496833 NA non-coding upstream 78449 17033136 ~ 17039646 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 433792 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 773681 16171677 ~ 16178314 (-)
G495475 NA other downstream 1341203 15606741 ~ 15612563 (-)
G494872 NA other downstream 2394743 14557623 ~ 14559023 (-)
CI01000340_14547725_14551493 NA other downstream 2398598 14546999 ~ 14552983 (-)
G496845 NA other upstream 89036 17043723 ~ 17045688 (-)
G496853 NA other upstream 222805 17177492 ~ 17242739 (-)
CI01000340_18419431_18419838 NA other upstream 1464631 18419058 ~ 18421201 (-)
G497442 NA other upstream 2204182 19158869 ~ 19166778 (-)

Expression


Co-expression Network