G497044


Basic Information

Item Value
gene id G497044
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000340
NCBI id null
chromosome length 19571558
location 18162350 ~ 18166938 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU570093
TGAAGTCAACAGTTATATTTATTGCAATTTTATATACAAACAACCCTAAAAGGCACTGTTTAAATAAGGATATAATGATTTTCCTTTTGATAACTAACATAGGTTGAATATAGCTTAGTTTGAATTATATATTAAAATTTAGTACAATGTAAAAAAGGCCACATGAAGGATATTTTCCACCTCAGCAAGATGGGGCCGTTTCGTTTTTTAAAAGTACCTCTCTGAGAAGAAAAAATTTGCATATCTCCGTCACAATGTAATGAGACAAAAAGAGCATGTGAAAACAGGAAGACATCCTTGAGGAATACAGCCGAACATCACTGCACATCCATCATTATTCACACAAATCAGTTAGAAGAAGGTTCAAAAGGAAGAAAAACGACATAAGAAGATATTGCATGAAAGAGGCTGTATTCAGAATGGAGTACTAGCATACTGTGCAGTATATACTGCGTACTGCCTGCGGTTTTCAAAACAGTATGCATTGTGCAACAATAAACATTTTTATTTCAGCAGCGTCTGCTTATCCCAGAAGGCATTCTGGCAAGGACTTCTCTCAAAGTCAAGAATAAACGTTCTTTCAGTAAAATTAATGCAAGTATGTGTAAAAATGTCACTTTTTGGTGTCGGATCAAATGATGATTGAAGAAAAATCAAACTCTGATGCATTTATCAAAAAGGAAATGGAAGGTCAAGTGCACTGCATTGTGGTGTAGAGTTTTCTGTGCTCATTTTGGCAACTGTAGTATGTTGTAGTACATACATGTAAATGTAGTATGCATGCAGAAAACTCATACTGTGCACAGTATACTGCAGAAGTAGTATGGGTAGTATGCTATTCTGAACACAGCCGGAGAGGTCAGATCATGTGGACAGTACTAATGCTCGTTATGCCCACTAGAGGTCAGTGTGACTTAGTTATTTAACATGAATTCAATCCACAAACTGAATTACAAGCATTTCTCAGATCTAACCACTTCTAGTGAAGGTTTGTCCAATTTCTGAATTACAGTTCCCAGTTTTGTAGTTTTGGCTTGTAAAATAAAGAAAGAGTGAGGCATAACCATATTTCCCTTACAAAATCCATTTACCATATAAATACTATGGTATATGAATATGGTAGTCATGAAGTACCACGGTATTTAGGGATGCACCGATATGAAAATTGTGTCCGATACGATAATTCTTTATATTTGAAAGCCGATAACCAATATATTAACCGATAAATCTAAATCAAAATTTTTATATAGTTTTATGTATTTTATGTATTTTTTTTACGTAGCCTATATGACAGACTTGCTCTGCACTGCTGTATTTTCCTTTTTGAAGTGTTTTTTAAATCATATTCCAAGCAAATCAAAACCATCATGGTGGACAGTGCGCATCTGAAATTAACATATATTGTCCGATACCGATATGGTGGCCGATATATCGTGCCATCCCTAAATTACCATCTGAATCCATCACTGTACCATGGTACTACCACCATAACTTTTTTGTAAGGGTTTGACAGGTTGCATAGATTCATAGCAGATATTCTGGAAGACGACGTATCTTTAAAAGGTTATATTTAAAGTAAGAAGAAAGTCAAATTAGTTTTTTCTCACCGTAGAAAGATTTGAGATTTAATTTCTCAAACCGCTCTCAGCTGCCAAACGTTAAAGCCCTTTCTATGATCAGAGCAGCTGCGTTTTTCACAGTCTCGCACAACTGGAATATCAACAAAACCGTGAAATACTAGCTCTGTTCAAAAACCTAGTGAGCTGCCTACTTAGACAGCATTTTAAGGGATCATAGGAAGGCTAGCAGCAAATCGCTTGGGGGATAAATCTATATAAGATGGTGCTGAGACAAGAGAAATAATACTATTAAGTGTTTAATTATTTATTATAAAGTTTATTGATTTAATTATAATCATTCAATTTTATTTTATTAGAATTACAATGGACTATTTTATGTTTGTTTTTATGCTTATTGCATAATTTTATGCTATTGCTTCATCATAGCAATGTAAATGTCAAAACATAACATTATTTGTGTCGCATCCAGAGGTGCTGCCTATCTAGTGCGTGTCAAATCAGTTCAGACTGGATGCTGTCTATGTAGACTCACTAGGTTCTAGAACAGATTTTAACATCTTGTTTTGTGTCTGTTGCCGCTCTGAAAACATATGATTAATGCGATTATGTTTTTAAACATTCATAAAGTTTAGCTGAGATACAAACCAATAAAATGAGAAAGAATAAAAATGTCAGAGCTATGAGGAAAACAGAGAAATCGTCACTGAATGGCTTTAGGTTTTGGCCGTCCGTGTCTGAACACTGACCCGTGACAGTCTGTGATGGAAGATTTGGTTTGATGTCCAGTGGTCCGCCGTTACGCCAGCAGCCCTAGTCGCTTGACCTTGGCCGACAGGAAAGAGTGAATGATGAAGACGATGGTTTTAGGGCAGGAGTGAAGGTCCAGTTGCTGAAAACGATCTCTGCTTCTGGGCCTCCGAAGTCGAGGAACATCATGCGGACGCCGTCGTCTGAGGACATGCGCAGACGCTCGAACGGCTGCTGGAGAAGGATGTTCTTCCTGACGCCGGCCTCCTCCGTAAACAACAAGAAGCCTTTGTCTATGTGAACGCTCAACATACACGACTTCCCGTTCCAGCTGCACGCTACAAAACACACAGGATGATTAGCTTTAATTAGCTAGTAA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU570093 True 2706 lncRNA 0.37 2 18162350 18166938

Neighbor

gene id symbol gene type direction distance location
CI01000340_18091595_18104080 CBFA2T2 coding downstream 58270 18090808 ~ 18104080 (-)
CI01000340_18030360_18041157 ITCHB, ITCHA, ITCH coding downstream 121193 18030245 ~ 18041157 (-)
CI01000340_18013773_18027276 DDX27 coding downstream 135074 18013531 ~ 18027276 (-)
CI01000340_17996222_18008569 NA coding downstream 151512 17995434 ~ 18010838 (-)
CI01000340_17700896_17753828 CDH22 coding downstream 408522 17700825 ~ 17753828 (-)
CI01000340_18185156_18206837 NA coding upstream 17972 18184910 ~ 18206837 (-)
CI01000340_18228042_18229807 NA coding upstream 60237 18227175 ~ 18229807 (-)
CI01000340_18302048_18303998 NA coding upstream 134450 18301388 ~ 18304048 (-)
CI01000340_18408556_18408855 NA coding upstream 241584 18408522 ~ 18408855 (-)
CI01000340_18419431_18419838 NA coding upstream 252120 18419058 ~ 18421201 (-)
G497105 NA non-coding downstream 97265 18064125 ~ 18065085 (-)
G497099 NA non-coding downstream 111164 18050328 ~ 18051186 (-)
G497094 NA non-coding downstream 117896 18044182 ~ 18044454 (-)
G497092 NA non-coding downstream 155335 18006655 ~ 18007015 (-)
G497081 NA non-coding downstream 198272 17963692 ~ 17964078 (-)
G497130 NA non-coding upstream 131531 18298469 ~ 18351804 (-)
G497171 NA non-coding upstream 244342 18411280 ~ 18411572 (-)
G497173 NA non-coding upstream 247535 18414473 ~ 18414707 (-)
G497177 NA non-coding upstream 251815 18418753 ~ 18419030 (-)
CI01000340_18482872_18484601 NA non-coding upstream 313427 18481349 ~ 18485055 (-)
G496853 NA other downstream 919611 17177492 ~ 17242739 (-)
G496845 NA other downstream 1116662 17043723 ~ 17045688 (-)
CI01000340_16515291_16518346 TUSC2A, TUSC2 other downstream 1642376 16514899 ~ 16518531 (-)
CI01000340_16175837_16177624 NA other downstream 1982265 16171677 ~ 16178314 (-)
G495475 NA other downstream 2549787 15606741 ~ 15612563 (-)
G497442 NA other upstream 991931 19158869 ~ 19166778 (-)

Expression


Co-expression Network